Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c02
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    28   1.8  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   5.4  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    25   9.5  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 459  LTENLLSHPFIVLRRQCQVHNNLRNYHIVPYTLLPVVVRLHRRQ 590
            L ++  S P  V+  Q ++HN+  +   +   LLP++  LH ++
Sbjct: 1046 LIKHFCSEPQKVVNSQLELHNSAYSLDAISQNLLPMLKDLHSKE 1089


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 270 NRNDLRNLPLSYNR*SYNNKIILLKH-FFIIQIYNTRHYIII 148
           N  ++ ++P  Y+R  Y+ K ILLK+  FII  Y   +Y++I
Sbjct: 37  NAPNIYSIPFFYDRICYDYKNILLKYELFIIYYY---YYLLI 75


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 333 QQIYGYHTPITEEFQGPPLVMDENPDE 413
           Q I  +H    EEF+GP ++ +E PDE
Sbjct: 316 QNIEDFHYTPREEFEGPFIIFNE-PDE 341


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/66 (21%), Positives = 34/66 (51%)
 Frame = +3

Query: 459 LTENLLSHPFIVLRRQCQVHNNLRNYHIVPYTLLPVVVRLHRRQDVTTLWKGIGSTCIVR 638
           + E+ + +P   ++ + Q+ N +     V   ++  V+++   + V +LW+GI S  +  
Sbjct: 31  ILEHSVMYPVDAIKTRMQMLNGVSRS--VSGNIVNSVIKISSTEGVYSLWRGISSVIMGA 88

Query: 639 GLNLAV 656
           G + A+
Sbjct: 89  GPSHAI 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,340
Number of Sequences: 5004
Number of extensions: 63676
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)