Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c02
         (797 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.7  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.7  
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    23   8.3  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 641 TPHNASGANPFPESCDILSPV 579
           +P + SG  PF  SC I  P+
Sbjct: 407 SPSSLSGTGPFGGSCQIHGPI 427


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 641 TPHNASGANPFPESCDILSPV 579
           +P + SG  PF  SC I  P+
Sbjct: 407 SPSSLSGTGPFGGSCQIHGPI 427


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 581 QETRCHNSLERDWLHLHCEGFEFSR--*RCCSQGH 679
           Q TRC   LER  +   C G + S+   RC  Q H
Sbjct: 462 QLTRCFRCLERGHIAATCTGEDRSKRCLRCGDQTH 496


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 785,594
Number of Sequences: 2352
Number of extensions: 16592
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)