Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c02
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032636-5|CAA21607.2|  500|Caenorhabditis elegans Hypothetical ...    89   4e-18
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    31   1.3  
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p...    29   5.1  
Z46787-1|CAA86739.2|  360|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AL032636-5|CAA21607.2|  500|Caenorhabditis elegans Hypothetical
           protein Y40B1B.8 protein.
          Length = 500

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 41/119 (34%), Positives = 68/119 (57%)
 Frame = +3

Query: 441 ISVASLLTENLLSHPFIVLRRQCQVHNNLRNYHIVPYTLLPVVVRLHRRQDVTTLWKGIG 620
           + ++ ++T++L+SHP  VLRRQCQVH    + H+ P TL+PV+     +Q + T WKG  
Sbjct: 72  LGLSDVITKSLISHPCGVLRRQCQVHQFAGSLHLTPVTLIPVICNSVAKQGIQTFWKGAI 131

Query: 621 STCIVRGLNLAVEDAVAKGTGWPKEVNKCNSVLQFVQHIALKSLSLALITPFYSASLVE 797
            + ++ GL    E  +    G P+      S  ++ +HI LK ++   +TPFY +S +E
Sbjct: 132 GSSVLWGLTNVTEIVLGDLMGLPRTFVVNGSAEKYWKHIVLKGVTFVTMTPFYISSFIE 190


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 298 IEKRMIYTIPVTSRFMGTILQLLKSFKDHLLLWMKTQMKI 417
           I +   + +P++ + M T L  L++F   LL W+ TQM +
Sbjct: 214 IRRSSNHNLPLSVKVMDTTLFALQNFSISLLTWLNTQMDV 253


>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 58  SVHRSSAVIFGCFK*L*SIKSNKDLLKSYI 147
           S+ +SS ++FGCFK   + KS +DL K  +
Sbjct: 27  SIRKSSFIMFGCFKKKKTNKSLEDLKKDVV 56


>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 58  SVHRSSAVIFGCFK*L*SIKSNKDLLKSYI 147
           S+ +SS ++FGCFK   + KS +DL K  +
Sbjct: 27  SIRKSSFIMFGCFKKKKTNKSLEDLKKDVV 56


>Z46787-1|CAA86739.2|  360|Caenorhabditis elegans Hypothetical
           protein C16C10.1 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/35 (28%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 414 DNNAYITTAISVASL-LTENLLSHPFIVLRRQCQV 515
           D+N ++ + +S A+  +  ++ +HPF V++  CQ+
Sbjct: 264 DHNPFVVSFVSGAAAGVVASIFTHPFDVIKTNCQI 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,061,857
Number of Sequences: 27780
Number of extensions: 351584
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)