Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c01
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   3.7  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   3.7  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    25   3.7  
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    25   3.7  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   4.9  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    24   4.9  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    24   4.9  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    24   6.5  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    24   6.5  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
 Frame = +1

Query: 118 PDPGFSRPVIGQPGYVPISTGPAYVNRPYNR----PQRPSKAVNN*NPVPRSSRWEV-SN 282
           P+PG     +  P Y+     P  +N P  R    P  PS    + N    S+  +V +N
Sbjct: 115 PNPGNGNVGLNNPSYMNSQASPNIMNAPLQRDTSVPPAPSMVHPHTNTNANSNNLKVYAN 174

Query: 283 AMPHTHTRHDT 315
            +   +T + T
Sbjct: 175 QLSQQNTSNPT 185


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 126 RIRVRDENLSVGHSQQSEDENHEEFH 49
           R+R RD N S   S++S  + +  FH
Sbjct: 597 RLRTRDSNPSNTDSRESNHKKYNHFH 622


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -1

Query: 321 FFCIMSCVCVWHCVAYFPPRAPGN 250
           F C   C C +H     PP  P N
Sbjct: 129 FICCEGCPCSFHLSCLEPPLTPEN 152


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 165 HVSGLTDYGPRKARIRVRDENL 100
           +V+GL DY PR  R    D+N+
Sbjct: 108 YVAGLQDYAPRSMRDNDWDDNV 129


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 145 IGQPGYVPISTGPAYVNRPYN 207
           +GQ   VPI   PAY N   N
Sbjct: 133 VGQQSSVPIHINPAYTNSHQN 153


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -1

Query: 273 FPPRAPGNGVLIINCLTWPLGSVVGPVYVRRSSTYWHVSGLTDYGPRKARIRVRDENLSV 94
           F P +  + VLI   +  P   V+  +Y R  S   H+    + G + + I  RD+ L +
Sbjct: 15  FLPISISSAVLIEREINVPTTHVLQTLYTRFWSFKAHLGVDMELGIKGSLIHYRDDKLFL 74

Query: 93  GHSQQS 76
           G   +S
Sbjct: 75  GEYPKS 80


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 198 PVYVRRSSTYWHVSGLTDYGPRKARIRVRDENLSVGHSQQSEDENHEEFHFY 43
           P  V  SS  + + G +     KA   VR  N++ GH + S +    +  FY
Sbjct: 386 PREVSPSSGGYRMFGHSKPSSYKASGPVRPPNMATGHMRTSSEPTSYDSEFY 437


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = +1

Query: 259 SSRWEV---SNAMPHTHTRHDTK 318
           S RW V   S   P  HTRHD+K
Sbjct: 144 SHRWTVPLLSEMDPAEHTRHDSK 166


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 163 VPISTGPAYVNRPYNRPQRPSKAVNN 240
           VP +     ++ P+NR QRP + V N
Sbjct: 49  VPEAVSNIIMSTPFNRVQRPKRHVFN 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,689
Number of Sequences: 5004
Number of extensions: 27600
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)