Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3c01
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0398 - 22598895-22599100,22599865-22599943 32 0.090
06_03_0905 + 25843547-25844314 31 0.21
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 1.1
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 28 1.5
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 28 1.9
04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964... 28 1.9
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 1.9
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 27 2.6
06_03_0442 + 20837492-20837621,20841842-20842075,20842435-208425... 27 2.6
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 27 3.4
12_01_1017 - 10348198-10348326,10348412-10348532,10348746-103492... 27 4.5
09_03_0174 - 13097138-13098265 27 4.5
04_04_0195 - 23488490-23488891,23489016-23489243,23489348-234894... 27 4.5
12_01_0442 + 3495333-3496484 26 5.9
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667... 26 5.9
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 26 5.9
03_02_0273 - 7036125-7037999 26 5.9
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 26 5.9
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269... 26 5.9
06_03_0496 - 21415596-21416068,21416618-21417224 26 7.8
>02_04_0398 - 22598895-22599100,22599865-22599943
Length = 94
Score = 32.3 bits (70), Expect = 0.090
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 55 FFMIFVLALLAMANAQVLISNPDPGFSRPVIGQPGYVPISTG-PAYVNRPYNRPQRP 222
F ++ V AL +A+AQ +N G P G Y P + G P +RP++RP RP
Sbjct: 9 FALVVVAALCLVASAQDPQANKQGGGGPPGYGH--YPPWNGGYPGRPDRPWDRPDRP 63
>06_03_0905 + 25843547-25844314
Length = 255
Score = 31.1 bits (67), Expect = 0.21
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 46 KMKFFMIFVLALLAMANAQVLIS-NPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRP 222
K++ F++ +L LL+ A +L +P+ +P +P + S P + P N RP
Sbjct: 6 KLRPFLLTLLLLLSTTVASILAEYDPECDCDKPKHPKPSHP--SPSPGHPKGPKNPTPRP 63
Query: 223 SKAVNN*NPVPRSSRWEVSNAMPHTH 300
K +PV R +P TH
Sbjct: 64 PKGPTYPSPVTRPPPLVAPPKVPVTH 89
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 70 VLALLAMANAQVLISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPSKAVNN*NP 249
++ ++A A ++ SN G S +GQ VP S+G NRP + +N N
Sbjct: 1263 LVQIIAHVQAMLIQSNSGHGMSGG-LGQNSGVPTSSGGGVEPVGANRPNTTASGINASNF 1321
Query: 250 VPRS 261
V RS
Sbjct: 1322 VSRS 1325
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 102 SSHLEPGSWLFSARNRSTRIRANKYWTCVRKPALQQTPKAK*GS**LKPRSPELAVGSKQ 281
++H PGS +R ST R K + +R P+ P+A S PR +A ++
Sbjct: 108 AAHTPPGSGRSLSRCSSTSSRIRKKFAWLRSPSPAPAPRAPTPSEPPPPREAAMAARERR 167
Query: 282 R 284
R
Sbjct: 168 R 168
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -1
Query: 183 RSSTYWHVSGLTDYGPRKARIRVRDENLSVGHSQQSEDENHEEFHFYMITSY 28
++ST +SG T PRK + V + ++D+ H ++H+ +Y
Sbjct: 154 KASTSKKLSGKTKTNPRKEPEDPNCSHWHVIEEKNTDDDEHADYHYTRFANY 205
>04_04_1451 +
33695734-33695806,33695946-33696179,33696341-33696434,
33696532-33696749,33696859-33696992,33697098-33697325,
33697417-33697845
Length = 469
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 294 VWHCVAYFPPRAPGNGVLIINCLTWPLGSVVGPV 193
+W CVA+ G GVL ++ LG V GP+
Sbjct: 27 LWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPI 60
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 169 ISTGPAYVNRPYNRPQRPSKAVNN*NPVPRSSRWEVSNAMP 291
+ T P Y+N + QRP K + R +RWE+ P
Sbjct: 2122 VHTKPPYLNSIFLATQRPEKILKKSQLTERWARWELFMQYP 2162
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 124 PGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPSKAVNN*NPVP 255
P +P GQPGY T P ++ P + A NP P
Sbjct: 638 PAAGQPGYGQPGYTQPPTNPPAYDQSAQPPAQSGYAAPPANPQP 681
>06_03_0442 +
20837492-20837621,20841842-20842075,20842435-20842528,
20842653-20842870,20842956-20843095,20843231-20843878
Length = 487
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 294 VWHCVAYFPPRAPGNGVLIINCLTWPLGSVVGPV 193
VW A+ G+GVL + T LG VVGPV
Sbjct: 46 VWTASAHIITAVIGSGVLSLAWATAQLGWVVGPV 79
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 27.1 bits (57), Expect = 3.4
Identities = 21/68 (30%), Positives = 24/68 (35%)
Frame = +1
Query: 121 DPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPSKAVNN*NPVPRSSRWEVSNAMPHTH 300
DP S P P P + P P P R P+P S+ S A P H
Sbjct: 162 DPAPSLPHAPAPP-PPQAPAPTPPQAPAPTPPRAPTPTPPQAPLPAPSKSRASQAPPPAH 220
Query: 301 TRHDTKKK 324
TR K K
Sbjct: 221 TRATKKAK 228
>12_01_1017 -
10348198-10348326,10348412-10348532,10348746-10349275,
10349318-10349433,10349672-10349990,10350019-10350106,
10350194-10350639
Length = 582
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 198 PVYVRRSSTYWHVSGLTDYGPRKARIRVRDE-NLSVGHSQQSEDENH 61
P++VR +ST+W+V+ L K +I++ D + ++ + +D N+
Sbjct: 496 PIFVRGNSTHWYVAVLNG---AKEKIQILDSMRMDKSYNDKDKDLNN 539
>09_03_0174 - 13097138-13098265
Length = 375
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 189 VRRSSTYWHVSGLTDYGPRKARIRVRDENLSVGHS 85
+R SS W LT+Y P RIRV + V H+
Sbjct: 161 IRNSSGEWEDWKLTEYHPDLPRIRVSPDTNPVLHN 195
>04_04_0195 -
23488490-23488891,23489016-23489243,23489348-23489481,
23489685-23489899,23490049-23490142,23490293-23490526,
23490643-23490736
Length = 466
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 294 VWHCVAYFPPRAPGNGVLIINCLTWPLGSVVGP 196
VW CVA+ G+GVL + LG V GP
Sbjct: 34 VWTCVAHIITAVIGSGVLSLAWSVAKLGWVGGP 66
>12_01_0442 + 3495333-3496484
Length = 383
Score = 26.2 bits (55), Expect = 5.9
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 67 FVLALLAMANAQVLISNPDPGFSRPVIGQP-GYVPISTGPAY--VNRPYNRPQRPSKAVN 237
+VLAL AMA+ VLI++ D PV +P Y+P + A+ P RP P
Sbjct: 21 YVLALPAMASLAVLIAHLDAAV--PVPRRPRSYLPRAVPMAWWAFRLPVFRPPPPPPPPP 78
Query: 238 N*NPV 252
NPV
Sbjct: 79 AKNPV 83
>08_02_0851 -
21866088-21866210,21866311-21866413,21866531-21866744,
21866877-21867075,21867171-21868151
Length = 539
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 94 NAQVLISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPSKAVN 237
NA++ I +PD G S P QPG + I G + N P+ K ++
Sbjct: 362 NAELKIVDPDTGLSLP-RNQPGEICI-RGKQIMKGYLNNPEATEKTID 407
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 118 PDPGFSRPVIGQPGYVPISTGPAYVNRP 201
PDP F P G YVP + + V+ P
Sbjct: 373 PDPSFRDPYTGANAYVPGQSASSTVSAP 400
>03_02_0273 - 7036125-7037999
Length = 624
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 70 VLALLAMANAQVLISNPDPGFSRPVIGQPGYVPISTGPAY 189
V AL+ + A + SN G S GQP +P+S P +
Sbjct: 187 VSALMNASAANIAASNGVAGNSTFATGQPVLIPVSQPPRF 226
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +1
Query: 76 ALLAMANAQVLISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRP 213
A +A NA P + PGY+ P + RP+ +P
Sbjct: 91 AKIAQVNANRAARRNTPSEDSIALENPGYIASDMPPPLLTRPHRKP 136
>01_06_0807 +
32125987-32126029,32126030-32126208,32126760-32126943,
32127714-32127788,32128079-32128188,32128747-32128965,
32129124-32129279,32129759-32129911,32130223-32130349,
32131598-32131728,32131858-32132139
Length = 552
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 64 IFVLALLAMANAQVLISNPDPGFSRPVIGQPGYV-PISTGPAYVNRPYNRPQRPS 225
+FVL+ LA +L+ P FSRP+ P I P RPYN R S
Sbjct: 7 LFVLSSLAGTIYFLLLLLPHVVFSRPLFPLPSKSNGIEKRPLQTFRPYNIAHRGS 61
>06_03_0496 - 21415596-21416068,21416618-21417224
Length = 359
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 138 PRKARIRVRDENLSVGHSQQSEDENHEE 55
PRK + +D+N + G + DE+ EE
Sbjct: 298 PRKEKTETKDKNKNSGDEKDEGDEDDEE 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,221,845
Number of Sequences: 37544
Number of extensions: 193145
Number of successful extensions: 582
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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