Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c01
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical pr...    28   1.3  
AY305834-1|AAR11979.1|  327|Caenorhabditis elegans nuclear recep...    28   1.3  
AF083228-1|AAD03686.1|  415|Caenorhabditis elegans nuclear recep...    28   1.3  
AC006810-4|AAT68890.1|  425|Caenorhabditis elegans Nuclear hormo...    28   1.3  
AC006810-3|AAF59634.2|  414|Caenorhabditis elegans Nuclear hormo...    28   1.3  
AF099003-1|AAC68742.1|  440|Caenorhabditis elegans Hypothetical ...    27   2.3  
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AL132862-30|CAB60565.3|  716|Caenorhabditis elegans Hypothetical...    26   5.4  
Z81491-6|CAE17746.1|  185|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF039048-5|AAB94236.1|   76|Caenorhabditis elegans Hypothetical ...    26   7.2  
Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical p...    25   9.5  
Z81047-3|CAB02829.1|  389|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z82068-3|CAB04900.2| 1071|Caenorhabditis elegans Hypothetical
           protein W04A4.5 protein.
          Length = 1071

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 165 HVSGLTDYGPRKAR-IRVRDENLSVGHSQQSEDENHEEFHFYMITSYHR 22
           H   L +  P   R IRV DE   +G   +S+++ +E+    ++ +Y+R
Sbjct: 688 HYRFLRNASPNLVRPIRVLDEEKQIGRCSKSDEKTNEKAEEVVMNTYYR 736


>AY305834-1|AAR11979.1|  327|Caenorhabditis elegans nuclear receptor
           NHR-13 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 318 FCIMSCVCVWHCVAYFPPRAPGNGVLI 238
           FC++  +CVWH V+Y+     G  + I
Sbjct: 234 FCLLKAICVWH-VSYYRLSEDGRRIAI 259


>AF083228-1|AAD03686.1|  415|Caenorhabditis elegans nuclear receptor
           NHR-13 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 318 FCIMSCVCVWHCVAYFPPRAPGNGVLI 238
           FC++  +CVWH V+Y+     G  + I
Sbjct: 322 FCLLKAICVWH-VSYYRLSEDGRRIAI 347


>AC006810-4|AAT68890.1|  425|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 13, isoform b protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 318 FCIMSCVCVWHCVAYFPPRAPGNGVLI 238
           FC++  +CVWH V+Y+     G  + I
Sbjct: 321 FCLLKAICVWH-VSYYRLSEDGRRIAI 346


>AC006810-3|AAF59634.2|  414|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 13, isoform a protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 318 FCIMSCVCVWHCVAYFPPRAPGNGVLI 238
           FC++  +CVWH V+Y+     G  + I
Sbjct: 321 FCLLKAICVWH-VSYYRLSEDGRRIAI 346


>AF099003-1|AAC68742.1|  440|Caenorhabditis elegans Hypothetical
           protein Y59C2A.2 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/65 (27%), Positives = 24/65 (36%)
 Frame = +1

Query: 118 PDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPSKAVNN*NPVPRSSRWEVSNAMPHT 297
           P P    PVI +P        P ++      P  P     N  P PR +     N  PHT
Sbjct: 9   PGPAAQNPVIQEP--------PEHILAQLQNPPEPENPPQN-APNPRGNAQNPPNPPPHT 59

Query: 298 HTRHD 312
             +H+
Sbjct: 60  QHQHN 64


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 109 ISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPSKAVNN 240
           ++   P + +P    P Y  I   P +   P+N  Q P  A N+
Sbjct: 773 VNQQQPIYQQPAPQYPPYNSIQNNPQHGPSPFNYSQVPQPAYNH 816


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 109 ISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPSKAVNN 240
           ++   P + +P    P Y  I   P +   P+N  Q P  A N+
Sbjct: 777 VNQQQPIYQQPAPQYPPYNSIQNNPQHGPSPFNYSQVPQPAYNH 820


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +1

Query: 106 LISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPSKAVNN*NPVPRSSRWEVSNA 285
           L+  P P   RPV G+P     ST  A   RP        +A+ +  P   +      +A
Sbjct: 283 LLGIPAPAVPRPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSA 342

Query: 286 MPHTHT 303
            P T T
Sbjct: 343 TPATRT 348


>Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical
           protein C36A4.5 protein.
          Length = 954

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +1

Query: 106 LISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPSKAVNN*NPVPRSSRWEVSNA 285
           L+  P P   RPV G+P     ST  A   RP        +A+ +  P   +      +A
Sbjct: 305 LLDIPAPAVPRPVAGKPSTRSASTTGAARTRPAIPAVSAPRALTSRAPTGPACPTTTRSA 364

Query: 286 MPHTHT 303
            P T T
Sbjct: 365 APATRT 370


>AL132862-30|CAB60565.3|  716|Caenorhabditis elegans Hypothetical
           protein Y73F8A.1 protein.
          Length = 716

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = -1

Query: 189 VRRSSTYWHVSGLTDYGPRKARIRVRDENLSVGHSQQSEDENHEEF 52
           +  + T ++V+ +T++ P K    + DE   +   +++  ENH ++
Sbjct: 595 INEAFTRFNVTSMTEHVPEKVAEDIADEVARMTEQKRNYMENHRDY 640


>Z81491-6|CAE17746.1|  185|Caenorhabditis elegans Hypothetical
           protein D1086.8 protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 231 CLTWPLGSVVGPVYVRRSSTYWHV 160
           CL W +    G  Y ++   YWH+
Sbjct: 155 CLKWTIRDACGRSYWKQYKPYWHL 178


>AF039048-5|AAB94236.1|   76|Caenorhabditis elegans Hypothetical
           protein F16B4.5a protein.
          Length = 76

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 58  FMIFVLALLAMANAQVLISNPDPGFSRPVIG 150
           F+I +LA+LA+  A+     P PG+ RP  G
Sbjct: 3   FLILLLAVLAIVTAK-----PHPGYGRPSYG 28


>Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical
           protein C08F11.13 protein.
          Length = 404

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 17/68 (25%)
 Frame = -1

Query: 318 FCIMSCVCVWHCVAYFPPRAPGN------------GVLIINCLTW---PLGSV--VGPVY 190
           FC+++ +C++  + YF  ++P N              L+INC+ W   PL  +  VG V 
Sbjct: 303 FCVLTVICLFSKIVYF-HKSPKNVETRFFMKKWYLWFLLINCVIWSSIPLYVIGKVGNVV 361

Query: 189 VRRSSTYW 166
              +S +W
Sbjct: 362 FSPNSLFW 369


>Z81047-3|CAB02829.1|  389|Caenorhabditis elegans Hypothetical
           protein C41G6.5 protein.
          Length = 389

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 232 LPYLAFGVCCRAGLRTQVQY 173
           + Y  FGVC   G   QVQY
Sbjct: 34  MSYTKFGVCAVCGFSCQVQY 53


>Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical
           protein B0393.2 protein.
          Length = 585

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 133 SRPVIGQPGYVPIST-GPAYVNRPYNRPQRPSKAVNN*N 246
           ++P+I    +  I+  G ++ NR   RPQRP  AVN+ N
Sbjct: 381 AKPMIKSNNFSHITVAGSSHPNRT-QRPQRPPAAVNSKN 418


>U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical
           protein W05H9.2 protein.
          Length = 851

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 150 TDYGPRKARIRVRDENLSVGHSQQSEDENHEE 55
           TD GP   R RVR  N+ +      EDE  +E
Sbjct: 745 TDEGPNVGRRRVR-RNVELESDDDDEDEEEDE 775


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 109 ISNPDPGFSRPVIGQPGYVPISTGPAYVN-RPYNRPQ-RPSKAVNN*NPVPRSSRWEVSN 282
           ++ P P  + P I      PISTGP+Y +  P   P+  P       NP P     EVS 
Sbjct: 439 VAPPPPPSAPPTIK----FPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSK 494

Query: 283 AMP 291
           + P
Sbjct: 495 SPP 497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,796,913
Number of Sequences: 27780
Number of extensions: 162903
Number of successful extensions: 469
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)