Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c01
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   6.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   6.5  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   8.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    20   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 126 RIRVRDENLSVGHSQQSEDENHEE 55
           R+R R +N   G   + +DE +EE
Sbjct: 265 RLRKRRQNDGEGADDRDDDEENEE 288


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 69  RPRSAGYGQRSSSHLEPGSWLF 134
           RPR+  YG  S S ++    +F
Sbjct: 427 RPRAKDYGHSSGSVIDRNGVMF 448


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -1

Query: 312 IMSCVCVWHCVAYFPPRAPGNGVLIIN 232
           I  CVC+  C     P    NG +  N
Sbjct: 101 IAVCVCMRKCPRRHRPVCASNGKIYAN 127


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 86  LWPTLKFSSRTRILAFLGP*SVNPDTC 166
           L  T+  ++    L F GP  +NP  C
Sbjct: 33  LMNTMTHTTNAFCLPFCGPNVINPFFC 59


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 86  LWPTLKFSSRTRILAFLGP*SVNPDTC 166
           L  T+  ++    L F GP  +NP  C
Sbjct: 32  LMNTMTHTTNAFCLPFCGPNVINPFFC 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,534
Number of Sequences: 438
Number of extensions: 2090
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)