Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3b24
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 258 3e-69
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 252 2e-67
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 216 1e-56
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 126 2e-31
10_01_0316 + 3479574-3482679,3482766-3483127 30 1.6
10_01_0318 + 3493913-3496976,3497064-3497392 29 4.8
05_05_0377 - 24498664-24500215,24500306-24500643 28 8.4
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 258 bits (632), Expect = 3e-69
Identities = 115/180 (63%), Positives = 141/180 (78%)
Frame = +2
Query: 170 RVVAAKPVVEMDGDEMTRIIWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAH 349
++ A P+VEMDGDEMTR+ W IK++LIFP++++D YFDLGLP+RD TDD+VT+++A
Sbjct: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAAE 64
Query: 350 AILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVP 529
A LK+NV IKCATITPDE RV+EF LK MW SPNGTIRNIL GTVFREPI+C++IPR+VP
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFREPIICKNIPRLVP 124
Query: 530 GWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDGTTERRVLYDFKTPGVAMGMYN 709
GWTKPI IGRHA GDQY+A D V+ PGK++LVY +D E V GVA MYN
Sbjct: 125 GWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVAQSMYN 184
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 252 bits (618), Expect = 2e-67
Identities = 111/181 (61%), Positives = 143/181 (79%)
Frame = +2
Query: 167 KRVVAAKPVVEMDGDEMTRIIWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSA 346
+++ A P+VEMDGDEMTRI W IK++LIFP++ +D Y+DLG+ HRDATDD+VT+++A
Sbjct: 4 EKIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAA 63
Query: 347 HAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVV 526
A LK+NV IKCATITPDE RV+EF LK+MW SPNGTIRNI+ GTVFREPI+C+++PR+V
Sbjct: 64 EATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFREPIICKNVPRLV 123
Query: 527 PGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDGTTERRVLYDFKTPGVAMGMY 706
PGWTKPI IGRHA GDQY+A D V+ PGK++LV+ +D + V GVA+ MY
Sbjct: 124 PGWTKPICIGRHAFGDQYRATDAVLKGPGKLKLVFEGKDEQIDLEVFNFTGAGGVALSMY 183
Query: 707 N 709
N
Sbjct: 184 N 184
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 216 bits (528), Expect = 1e-56
Identities = 108/191 (56%), Positives = 132/191 (69%), Gaps = 18/191 (9%)
Frame = +2
Query: 191 VVEMDGDEMTRIIWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNV 370
V GDEMTR+IW IK++LIFP++ +D Y+DLGLP+RDAT D+VTI+SA A LK+NV
Sbjct: 37 VTRNSGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNV 96
Query: 371 GIKCATITP------------------DEQRVEEFKLKKMWLSPNGTIRNILGGTVFREP 496
IKCATITP DE RV+EF L MW SPNGTIRNIL GTVFREP
Sbjct: 97 AIKCATITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREP 156
Query: 497 ILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDGTTERRVLYDF 676
I+C++IPR+VPGW KPI IGRHA GDQY+A D V+ PGK++LV+ ++ E V
Sbjct: 157 IICKNIPRLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFT 216
Query: 677 KTPGVAMGMYN 709
GVA+ MYN
Sbjct: 217 GAGGVALSMYN 227
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 126 bits (303), Expect(2) = 2e-31
Identities = 62/101 (61%), Positives = 77/101 (76%), Gaps = 2/101 (1%)
Frame = +2
Query: 251 LIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLK 430
LIFPY+++D YFDLGL +RDATDD+VT++SA A L T+T DE RV+EFKLK
Sbjct: 101 LIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFKLK 159
Query: 431 KMWLSPNGTIRNILGGTVFREPILCQSIPRV--VPGWTKPI 547
MW SPNGTIRNIL GTVFREPILC+++PR+ VP +P+
Sbjct: 160 SMWRSPNGTIRNILNGTVFREPILCKNVPRILSVPDGAEPV 200
Score = 27.9 bits (59), Expect(2) = 2e-31
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 665 LYDFKTPGVAMGMYN 709
+Y+FK PGVA+ MYN
Sbjct: 204 VYNFKGPGVALSMYN 218
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 455 TIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYT 634
++RN+ E + + I R W++ VIGR HG Y+ + V K V+ V
Sbjct: 842 SMRNLDSTEELPEDLTYEDILRATDNWSEKYVIGRGRHGTVYRT-ELAVGKQWAVKTVDL 900
Query: 635 TQ 640
+Q
Sbjct: 901 SQ 902
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 455 TIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQ 589
++RN+ E + + I R W++ VIGR HG Y+ +
Sbjct: 828 SVRNMDSTEELPEELTYEDILRGTDNWSEKYVIGRGRHGTVYRTE 872
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 450 FGLSHIFFNLNSSTLCSSGVIVAHLMPTLCF 358
+ S +F LN + +C + L+PT+C+
Sbjct: 343 YASSECYFGLNLNPMCKPSEVAYTLIPTMCY 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,393,698
Number of Sequences: 37544
Number of extensions: 398508
Number of successful extensions: 855
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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