Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3b19
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 178 7e-46
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 176 3e-45
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 169 4e-43
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.65
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.6
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.6
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 8.0
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 178 bits (433), Expect = 7e-46
Identities = 86/163 (52%), Positives = 112/163 (68%)
Frame = +1
Query: 199 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 378
SK+ PES+LK + +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 379 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 558
+I L R+AR GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129
Query: 559 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 687
AT ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALS 172
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 176 bits (428), Expect = 3e-45
Identities = 82/156 (52%), Positives = 109/156 (69%)
Frame = +1
Query: 220 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 399
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 400 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 579
AR GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 580 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 687
+ EPY+ +G PN K+VREL+YKRGF K++ QRIP++
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLS 171
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 169 bits (410), Expect = 4e-43
Identities = 78/156 (50%), Positives = 107/156 (68%)
Frame = +1
Query: 220 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 399
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 400 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 579
A+N+G+ +VP E KL FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLR
Sbjct: 75 AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134
Query: 580 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 687
I EPY+ +G PNL SVREL+YKRGF K++GQRI ++
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALS 170
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.65
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +1
Query: 301 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 417
+++K+ REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 400 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 519
+ N+G YY G +AFV I G+ + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 334 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 435
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 182 SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSR 355
S+G+ ++C L+Q+ C R R + + G+ LP + K G S R
Sbjct: 18 SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,896
Number of Sequences: 5004
Number of extensions: 51150
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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