Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3b19
         (706 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089648-1|AAL90386.1|  252|Drosophila melanogaster RH04903p pro...   213   1e-55
AE014134-1774|AAF52868.1|  252|Drosophila melanogaster CG4897-PA...   213   1e-55
X15109-1|CAA33207.1|  239|Drosophila melanogaster ribosomal  pro...   205   4e-53
BT028802-1|ABI34183.1|  227|Drosophila melanogaster LP23547p pro...    85   1e-16
AY071314-1|AAL48936.1|  257|Drosophila melanogaster RE33833p pro...    78   1e-14
BT029578-1|ABL75637.1|  257|Drosophila melanogaster IP16905p pro...    76   5e-14
BT029555-1|ABL75615.1|  257|Drosophila melanogaster IP16805p pro...    76   5e-14
BT021218-1|AAX33366.1|  257|Drosophila melanogaster RH63749p pro...    76   5e-14
AE014134-2146|AAF53155.2|  257|Drosophila melanogaster CG5317-PA...    76   5e-14
AY051415-1|AAK92839.1|  382|Drosophila melanogaster GH09360p pro...    30   2.7  
AE014297-77|AAF52133.1|  382|Drosophila melanogaster CG9855-PA p...    30   2.7  
AE014297-4130|AAF56715.1|  448|Drosophila melanogaster CG13972-P...    29   4.7  

>AY089648-1|AAL90386.1|  252|Drosophila melanogaster RH04903p
           protein.
          Length = 252

 Score =  213 bits (521), Expect = 1e-55
 Identities = 106/170 (62%), Positives = 126/170 (74%)
 Frame = +1

Query: 178 PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 357
           PV  K  +KKLPAVPES LK             +  LK+ +    +K+E   RAE+Y  E
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63

Query: 358 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNG 537
           Y   E+ EI+L R A+ R  +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNG
Sbjct: 64  YIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNG 123

Query: 538 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 687
           VF++LNKAT+NMLRIAEPYI WGYPNLKSVREL+YKRGF K + QR+PIT
Sbjct: 124 VFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPIT 173


>AE014134-1774|AAF52868.1|  252|Drosophila melanogaster CG4897-PA
           protein.
          Length = 252

 Score =  213 bits (521), Expect = 1e-55
 Identities = 106/170 (62%), Positives = 126/170 (74%)
 Frame = +1

Query: 178 PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKE 357
           PV  K  +KKLPAVPES LK             +  LK+ +    +K+E   RAE+Y  E
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63

Query: 358 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNG 537
           Y   E+ EI+L R A+ R  +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNG
Sbjct: 64  YIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNG 123

Query: 538 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 687
           VF++LNKAT+NMLRIAEPYI WGYPNLKSVREL+YKRGF K + QR+PIT
Sbjct: 124 VFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPIT 173


>X15109-1|CAA33207.1|  239|Drosophila melanogaster ribosomal
           protein protein.
          Length = 239

 Score =  205 bits (501), Expect = 4e-53
 Identities = 101/160 (63%), Positives = 120/160 (75%)
 Frame = +1

Query: 208 LPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIR 387
           LPAVPES LK             +  LK+ +    +K+E   RAE+Y  EY   E+ EI+
Sbjct: 1   LPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNEYIKAEQREIK 60

Query: 388 LARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATV 567
           L R A+ R  +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNGVF++LNKAT+
Sbjct: 61  LRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATI 120

Query: 568 NMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 687
           NMLRIAEPYI WGYPNLKSVREL+YKRGF K + QR+PIT
Sbjct: 121 NMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPIT 160


>BT028802-1|ABI34183.1|  227|Drosophila melanogaster LP23547p
           protein.
          Length = 227

 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
 Frame = -2

Query: 684 DWYTLSTQLGESTFVY*LTDTL*VGVSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQL 505
           D + L+  L EST V  L   L +G++P +V LGD  H+   L+Q  +HT+V L Q++QL
Sbjct: 25  DGHALAVMLHESTLVDQLPHGLQIGIAPGDVGLGDAQHVDGGLVQLDEHTVVDLPQTEQL 84

Query: 504 QNFTDLR*NLVDTTDSDDKCQFGFPGNVVVATIACLSG*SDFITF-LDAVFLDVL 343
           QN  DL  +LVDT D+DDK QFG  G+V +  +   +   D   F LD + L +L
Sbjct: 85  QNLADLGSHLVDTADTDDKGQFGLGGHVELVALLGQATQLDLALFRLDVLILVLL 139


>AY071314-1|AAL48936.1|  257|Drosophila melanogaster RE33833p
           protein.
          Length = 257

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 11/173 (6%)
 Frame = +1

Query: 205 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 369
           KLP    SVLKH             V  ++R+  IKK+        F+RAE +V  Y   
Sbjct: 10  KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66

Query: 370 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 531
           ER   R+ +            +A      KL FV+R+ G          + +  R+   +
Sbjct: 67  ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRLAGKKIFDKTTADIFRTLRMGSRH 126

Query: 532 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITS 690
           N VF+   K    +LR+ EP++ +G P+L S+RELV+K+GFA++ G++  I S
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQS 179


>BT029578-1|ABL75637.1|  257|Drosophila melanogaster IP16905p
           protein.
          Length = 257

 Score = 75.8 bits (178), Expect = 5e-14
 Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
 Frame = +1

Query: 205 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 369
           KLP    SVLKH             V  ++R+  IKK+        F+RAE +V  Y   
Sbjct: 10  KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66

Query: 370 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 531
           ER   R+ +            +A      KL FV+R  G          + +  R+   +
Sbjct: 67  ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126

Query: 532 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITS 690
           N VF+   K    +LR+ EP++ +G P+L S+RELV+K+GFA++ G++  I S
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQS 179


>BT029555-1|ABL75615.1|  257|Drosophila melanogaster IP16805p
           protein.
          Length = 257

 Score = 75.8 bits (178), Expect = 5e-14
 Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
 Frame = +1

Query: 205 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 369
           KLP    SVLKH             V  ++R+  IKK+        F+RAE +V  Y   
Sbjct: 10  KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66

Query: 370 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 531
           ER   R+ +            +A      KL FV+R  G          + +  R+   +
Sbjct: 67  ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126

Query: 532 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITS 690
           N VF+   K    +LR+ EP++ +G P+L S+RELV+K+GFA++ G++  I S
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQS 179


>BT021218-1|AAX33366.1|  257|Drosophila melanogaster RH63749p
           protein.
          Length = 257

 Score = 75.8 bits (178), Expect = 5e-14
 Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
 Frame = +1

Query: 205 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 369
           KLP    SVLKH             V  ++R+  IKK+        F+RAE +V  Y   
Sbjct: 10  KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66

Query: 370 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 531
           ER   R+ +            +A      KL FV+R  G          + +  R+   +
Sbjct: 67  ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126

Query: 532 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITS 690
           N VF+   K    +LR+ EP++ +G P+L S+RELV+K+GFA++ G++  I S
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQS 179


>AE014134-2146|AAF53155.2|  257|Drosophila melanogaster CG5317-PA
           protein.
          Length = 257

 Score = 75.8 bits (178), Expect = 5e-14
 Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
 Frame = +1

Query: 205 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 369
           KLP    SVLKH             V  ++R+  IKK+        F+RAE +V  Y   
Sbjct: 10  KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66

Query: 370 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 531
           ER   R+ +            +A      KL FV+R  G          + +  R+   +
Sbjct: 67  ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126

Query: 532 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITS 690
           N VF+   K    +LR+ EP++ +G P+L S+RELV+K+GFA++ G++  I S
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQS 179


>AY051415-1|AAK92839.1|  382|Drosophila melanogaster GH09360p
           protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 274 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGEAKLAF 450
           L++ LK++    +KKR I    E+ ++ +  +  +    ARQ R      V P E + A 
Sbjct: 310 LKIYLKQKQYGRRKKRRIVDYTEENIRNFMHRNNNSAAAARQERLPEQRPVPPAERRDAV 369

Query: 451 VIRIRG 468
           + R RG
Sbjct: 370 ITRQRG 375


>AE014297-77|AAF52133.1|  382|Drosophila melanogaster CG9855-PA
           protein.
          Length = 382

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 274 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGEAKLAF 450
           L++ LK++    +KKR I    E+ ++ +  +  +    ARQ R      V P E + A 
Sbjct: 310 LKIYLKQKQYGRRKKRRIVDYTEENIRNFMHRNNNSAAAARQERLPEQRPVPPAERRDAV 369

Query: 451 VIRIRG 468
           + R RG
Sbjct: 370 ITRQRG 375


>AE014297-4130|AAF56715.1|  448|Drosophila melanogaster CG13972-PA
           protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 277 QVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRL 390
           ++ +  +   ++K +EI++    YV+EYR ++ +E RL
Sbjct: 367 ELRILEQKKLLQKHKEIYEERMTYVQEYRAQKEEEQRL 404


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,881,288
Number of Sequences: 53049
Number of extensions: 551105
Number of successful extensions: 1360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)