Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3b16
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 30 1.8
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 29 2.3
04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241... 29 2.3
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 29 3.1
08_02_1595 - 28114751-28114858,28115018-28115283,28116609-281167... 28 5.4
08_02_0776 - 21083181-21083187,21083256-21083683,21083800-210840... 28 5.4
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 28 7.1
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634... 27 9.4
03_06_0627 - 35172246-35172349,35172903-35173005,35173107-351731... 27 9.4
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 27 9.4
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 82 SSEDVVDPRQNAEDIIDEILAEFTESRSPPL 174
S DV DPR A + ++++ + E RSPPL
Sbjct: 840 SGRDVPDPRLLAHEHMEDLSDDMMEERSPPL 870
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 29.5 bits (63), Expect = 2.3
Identities = 34/157 (21%), Positives = 67/157 (42%), Gaps = 7/157 (4%)
Frame = +1
Query: 52 KLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLFNMIQPPR- 228
K ++ + + + + DP + DI+D+ L E SR + G G + + + R
Sbjct: 233 KKISKKDKLMDKQFLKDPSEITWDIVDKKLKEIVASRG---KKGTGRIERVEQLTFLTRV 289
Query: 229 TRTPANS----FSENATIDDIDPA--SDLGASIRNKCMELEEILQSLKSRLNHVVLDENI 390
+TPA F + D++P+ + ++ KC+ ++ + + ++V+D ++
Sbjct: 290 AKTPAQKLEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYPNIVVDTSV 349
Query: 391 VLSPEANSMEAQLEHDLDTDCQEDLSLQEFLELLHSQ 501
E + E Q D D L FLE L S+
Sbjct: 350 ----EPDEKETQKGADYDGQIHVTGDLVAFLERLDSE 382
>04_04_1488 -
33922253-33922361,33922459-33922649,33922752-33924130,
33924205-33924340,33924427-33924502,33924806-33924925,
33925005-33925082,33925605-33925695,33925805-33925889,
33925977-33926132,33926317-33926373,33926454-33926552,
33926702-33926814,33926924-33927014
Length = 926
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +1
Query: 208 NMIQPPRTRTPANSFSENATIDDIDPA--SDLGASIRNKCMELEEILQSLKSRLNHVVLD 381
N+IQP N FS +A DI P+ +D + + C+ + + S++ ++ L+
Sbjct: 645 NVIQP--AGVSENIFSSSA---DIPPSMIADTMETFQASCLS-DCLPNSIQEFISSPDLN 698
Query: 382 ENIVLSPEANSMEAQLEHD 438
LSP+ ++E QL+HD
Sbjct: 699 SLTFLSPDMQNLEVQLQHD 717
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 29.1 bits (62), Expect = 3.1
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 7/154 (4%)
Frame = +1
Query: 61 NNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLFNMIQPPR-TRT 237
N + + + + DP + DI+D+ L E SR + G G + + + R +T
Sbjct: 550 NKKDKLMDKQFLKDPSEITWDIVDKKLKEIVASRG---KKGTGRVERVEQLTFLTRVAKT 606
Query: 238 PANS----FSENATIDDIDPA--SDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLS 399
PA F + D++P+ + ++ KC+ ++ + + ++V+D ++
Sbjct: 607 PAQKLEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYPNIVVDTSV--- 663
Query: 400 PEANSMEAQLEHDLDTDCQEDLSLQEFLELLHSQ 501
E + E Q D D L FLE L S+
Sbjct: 664 -EPDEKETQKGADYDGKIHVTGDLVAFLERLDSE 696
>08_02_1595 -
28114751-28114858,28115018-28115283,28116609-28116703,
28117179-28118154,28118245-28118369,28118443-28118569,
28118606-28118843
Length = 644
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +1
Query: 82 SSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLFNMIQPPRTRTPANSFSEN 261
S +D+V P Q E I+ +E + RSPP R NGV + ++ P +P + S+
Sbjct: 137 SEDDLVLPAQGNEYILKG--SELLD-RSPPDRQQNGVGEPKVETLKHPPEESPHSRGSQE 193
Query: 262 ATIDDIDPAS 291
P++
Sbjct: 194 GCSSSSSPSA 203
>08_02_0776 -
21083181-21083187,21083256-21083683,21083800-21084048,
21084172-21084248,21084351-21084483
Length = 297
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 340 LQSLKSRLNHVVLDENIVLSPEANSME-AQLEHDLDTDCQEDLS 468
LQS+ R V+ D ++ SPEA + E ++L +D +C S
Sbjct: 169 LQSVLRRAQQVLADHSLASSPEAATAELSELASAVDIECMSSSS 212
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 283 PASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPEANSMEAQLEHDLDTD 450
P L + ++ + LEE+L H ++EN V + +++E +E D TD
Sbjct: 737 PNETLVEAFKSMHIHLEEVLPDENGDDTHEAIEENGVEESQEDAVEVDVEADGSTD 792
>05_05_0303 -
23958989-23960563,23962628-23962864,23963250-23963449,
23964088-23964250,23964348-23964554,23964667-23964798
Length = 837
Score = 27.5 bits (58), Expect = 9.4
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 4/135 (2%)
Frame = +1
Query: 76 IDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLFNMIQPPRTRTPANSFS 255
I S D +DP +A+ + + L++ V DN + + + + S
Sbjct: 564 IASVLDEIDPLSSADSPHPDPIQNDDSDNHMSLQDSRTVRDNNYESDKSKANKNDDKNVS 623
Query: 256 EN----ATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPEANSMEA 423
+ T+DD DLG S + LE ++ +SR +NIV P++N
Sbjct: 624 TDPAFLGTVDDDKNVMDLGYSEVERHRRLEILMVKRRSR-------KNIVFDPDSN---- 672
Query: 424 QLEHDLDTDCQEDLS 468
L+ D D C+ + S
Sbjct: 673 -LDIDNDKVCKRNPS 686
>03_06_0627 -
35172246-35172349,35172903-35173005,35173107-35173190,
35173504-35173599,35173686-35173736,35173805-35173945,
35174098-35174154,35175089-35175163,35176255-35176527,
35176608-35176667,35176754-35176846,35177196-35177348
Length = 429
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 79 DSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVP 195
DS DV D + D++D AE + +R NG+P
Sbjct: 42 DSKPDVGDEKNTERDVVDGSSAEAGHIIATTIRGRNGLP 80
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 283 PASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPEANSMEAQLEHDLDTD 450
P L + +N + EE+L H ++EN V + +++E +E D TD
Sbjct: 732 PNETLVEAFKNMRIHQEEVLPDENGDDTHEAIEENGVEESQEDAVEVDVEADGSTD 787
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,079
Number of Sequences: 37544
Number of extensions: 256685
Number of successful extensions: 732
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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