Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3b16
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical pr... 34 0.098
Z83223-6|CAB05719.1| 884|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81538-6|CAB04387.1| 884|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p... 30 1.2
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 30 1.2
U50135-6|AAN63429.1| 925|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical pr... 29 2.8
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 4.9
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 4.9
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 4.9
Z68119-4|CAA92195.1| 271|Caenorhabditis elegans Hypothetical pr... 28 6.4
U23511-1|AAC46791.1| 859|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF067216-12|AAL02459.1| 403|Caenorhabditis elegans Hypothetical... 28 6.4
AF067216-11|AAL02458.1| 707|Caenorhabditis elegans Hypothetical... 28 6.4
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical... 27 8.5
>U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical
protein ZC196.4 protein.
Length = 468
Score = 33.9 bits (74), Expect = 0.098
Identities = 28/90 (31%), Positives = 40/90 (44%)
Frame = +1
Query: 244 NSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPEANSMEA 423
N EN DD P D N C E E Q +++ N + I+ N E
Sbjct: 144 NVTKENTIEDDKKP--DF-CEYSNICDEFLENYQKMENEHNEMTSKYQIL---GENKSEL 197
Query: 424 QLEHDLDTDCQEDLSLQEFLELLHSQNKIN 513
+ + D + +C+E EFLE L +QNK+N
Sbjct: 198 KEQDDSEKECEEQNG--EFLEKLENQNKVN 225
>Z83223-6|CAB05719.1| 884|Caenorhabditis elegans Hypothetical
protein E01G4.6 protein.
Length = 884
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/123 (20%), Positives = 59/123 (47%)
Frame = +1
Query: 46 NNKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLFNMIQPP 225
+ +V E+ I+ ++VV+P+ + + +E + E + + G +P + + +P
Sbjct: 463 SRNVVEAENAIE--KEVVEPKAEEKKVKEEDVKAVAEEKKEEKKPGK-LPMKIEKLEKPV 519
Query: 226 RTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPE 405
T++ + + +DD + A + + I+N E + ++S KS V +D+ L E
Sbjct: 520 DTKSENHELKK--VLDDKERALLVESEIKNTAEETKPKVESFKSEETTVAIDDMPALEKE 577
Query: 406 ANS 414
++
Sbjct: 578 ESA 580
>Z81538-6|CAB04387.1| 884|Caenorhabditis elegans Hypothetical
protein E01G4.6 protein.
Length = 884
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/123 (20%), Positives = 59/123 (47%)
Frame = +1
Query: 46 NNKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLFNMIQPP 225
+ +V E+ I+ ++VV+P+ + + +E + E + + G +P + + +P
Sbjct: 463 SRNVVEAENAIE--KEVVEPKAEEKKVKEEDVKAVAEEKKEEKKPGK-LPMKIEKLEKPV 519
Query: 226 RTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPE 405
T++ + + +DD + A + + I+N E + ++S KS V +D+ L E
Sbjct: 520 DTKSENHELKK--VLDDKERALLVESEIKNTAEETKPKVESFKSEETTVAIDDMPALEKE 577
Query: 406 ANS 414
++
Sbjct: 578 ESA 580
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 31.5 bits (68), Expect = 0.52
Identities = 22/58 (37%), Positives = 27/58 (46%)
Frame = +1
Query: 160 RSPPLRNGNGVPDNLFNMIQPPRTRTPANSFSENATIDDIDPASDLGASIRNKCMELE 333
R+PPLRN NG + N QP T P S E ++ A G SIR K +E
Sbjct: 3059 RAPPLRNSNGFLAST-NNFQPLPTDIPMRSDPELNHFVELHAAPRTGGSIRFKKPAME 3115
>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical protein
C18D4.2b protein.
Length = 1376
Score = 30.3 bits (65), Expect = 1.2
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = +1
Query: 49 NKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLF-NMIQPP 225
NKL +S +DS +D R N ED L ++ ++P R + ++ F N +
Sbjct: 1068 NKLTIKQSLLDSIDDYSTDRANPED----DLPSTSDEKTPTNRKRSESSESSFDNFMLKL 1123
Query: 226 RTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPE 405
+T + +++ + P DL ++ NK + Q +S +N+ ++ + +
Sbjct: 1124 AIKTSLSDLKDDSLTNGASPEVDLLSTSDNKTPTNRKRSQVSESNINNKIV-KFATIQSL 1182
Query: 406 ANSMEAQLEHDLDTDCQED 462
NS++ ++ +D + ED
Sbjct: 1183 LNSID---DYSIDGESPED 1198
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 30.3 bits (65), Expect = 1.2
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = +1
Query: 49 NKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLF-NMIQPP 225
NKL +S +DS +D R N ED L ++ ++P R + ++ F N +
Sbjct: 1068 NKLTIKQSLLDSIDDYSTDRANPED----DLPSTSDEKTPTNRKRSESSESSFDNFMLKL 1123
Query: 226 RTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPE 405
+T + +++ + P DL ++ NK + Q +S +N+ ++ + +
Sbjct: 1124 AIKTSLSDLKDDSLTNGASPEVDLLSTSDNKTPTNRKRSQVSESNINNKIV-KFATIQSL 1182
Query: 406 ANSMEAQLEHDLDTDCQED 462
NS++ ++ +D + ED
Sbjct: 1183 LNSID---DYSIDGESPED 1198
>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 30.3 bits (65), Expect = 1.2
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = +1
Query: 49 NKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLF-NMIQPP 225
NKL +S +DS +D R N ED L ++ ++P R + ++ F N +
Sbjct: 1068 NKLTIKQSLLDSIDDYSTDRANPED----DLPSTSDEKTPTNRKRSESSESSFDNFMLKL 1123
Query: 226 RTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPE 405
+T + +++ + P DL ++ NK + Q +S +N+ ++ + +
Sbjct: 1124 AIKTSLSDLKDDSLTNGASPEVDLLSTSDNKTPTNRKRSQVSESNINNKIV-KFATIQSL 1182
Query: 406 ANSMEAQLEHDLDTDCQED 462
NS++ ++ +D + ED
Sbjct: 1183 LNSID---DYSIDGESPED 1198
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 30.3 bits (65), Expect = 1.2
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = +1
Query: 49 NKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLF-NMIQPP 225
NKL +S +DS +D R N ED L ++ ++P R + ++ F N +
Sbjct: 1068 NKLTIKQSLLDSIDDYSTDRANPED----DLPSTSDEKTPTNRKRSESSESSFDNFMLKL 1123
Query: 226 RTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPE 405
+T + +++ + P DL ++ NK + Q +S +N+ ++ + +
Sbjct: 1124 AIKTSLSDLKDDSLTNGASPEVDLLSTSDNKTPTNRKRSQVSESNINNKIV-KFATIQSL 1182
Query: 406 ANSMEAQLEHDLDTDCQED 462
NS++ ++ +D + ED
Sbjct: 1183 LNSID---DYSIDGESPED 1198
>U50135-6|AAN63429.1| 925|Caenorhabditis elegans Hypothetical
protein C52E12.1 protein.
Length = 925
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +1
Query: 25 KKMKLDSNNKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNL 204
KK K + NN + + + + SS+ + P + +D ++ E +++ P + N +L
Sbjct: 754 KKNKKNKNNMEIPSANKVPSSQSSIVP---SAPKVDSLIVEKVVAKTEPKNDENQDKPDL 810
Query: 205 FNMIQPPRTRTPANSFS 255
+NM + P + +SFS
Sbjct: 811 WNMPKLPSMTSMFSSFS 827
>Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical
protein T15H9.5 protein.
Length = 173
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 25 KKMKLDSNNKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTES-RSPPLRNGN 186
K++K D+N LV N ++ +P+ + E DE A+ ES R +RN N
Sbjct: 103 KEVKADNNEPLVKNLKIAKKEQEEENPKTDLESHKDEAEAKKKESRRQKKMRNKN 157
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 226 RTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPE 405
R TPA EN + ++ + + ++R C E EIL+ + N VL E V
Sbjct: 292 RMNTPAQRIGENLSTSNVGN-NVVRETVREYCEETGEILEDFEVNQNDSVLTERNVTGSV 350
Query: 406 AN 411
N
Sbjct: 351 RN 352
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 226 RTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPE 405
R TPA EN + ++ + + ++R C E EIL+ + N VL E V
Sbjct: 195 RMNTPAQRIGENLSTSNVGN-NVVRETVREYCEETGEILEDFEVNQNDSVLTERNVTGSV 253
Query: 406 AN 411
N
Sbjct: 254 RN 255
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 226 RTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSPE 405
R TPA EN + ++ + + ++R C E EIL+ + N VL E V
Sbjct: 206 RMNTPAQRIGENLSTSNVGN-NVVRETVREYCEETGEILEDFEVNQNDSVLTERNVTGSV 264
Query: 406 AN 411
N
Sbjct: 265 RN 266
>Z68119-4|CAA92195.1| 271|Caenorhabditis elegans Hypothetical
protein T18D3.6 protein.
Length = 271
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 118 EDIIDEILAEFTESRSPPLRNGNGVPDNLFNMIQPPRTRTPANSFSENATIDDIDP 285
++I+D +L E+ L N NG N M+ P + +P S A DD DP
Sbjct: 141 QEIVDRLLREYDNWARAALNNNNGNFRNYNAMLSPSPSPSPNAS---PAPSDDEDP 193
>U23511-1|AAC46791.1| 859|Caenorhabditis elegans Hypothetical protein
C32D5.3 protein.
Length = 859
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/123 (16%), Positives = 52/123 (42%)
Frame = +1
Query: 43 SNNKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLFNMIQP 222
S ++ N+ DS++ P ID++ + + +PP+ + +F+++ P
Sbjct: 701 SGDQWQNDTPNFDSTDGRESPSGYKTVGIDDVSVDMSVDWTPPVSRKQSRRNTIFSIVNP 760
Query: 223 PRTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNHVVLDENIVLSP 402
P+ +T+DD+ ++ + + +E+ S+ S + + +E + +
Sbjct: 761 PKLNA--------STVDDLKAYANATFDPIEEGRKEKELTGSILSEIRNTDFEERVNTNE 812
Query: 403 EAN 411
N
Sbjct: 813 SLN 815
>AF067216-12|AAL02459.1| 403|Caenorhabditis elegans Hypothetical
protein C35E7.2b protein.
Length = 403
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/105 (20%), Positives = 47/105 (44%)
Frame = +1
Query: 49 NKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLFNMIQPPR 228
N+++ I SS D + + + D D++ E ++ R+ +G+ D F +
Sbjct: 302 NRVIPPSPRIPSSTDKKEMLKKSNDRFDKLREEVSDVRTQL----SGLEDTTFKKPKKLH 357
Query: 229 TRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRL 363
P + +D+D S+ + E++ +++SLK+R+
Sbjct: 358 FLEPDEESESDENGNDVDEFSEADDDDEDVDREMKVLVESLKNRV 402
>AF067216-11|AAL02458.1| 707|Caenorhabditis elegans Hypothetical
protein C35E7.2a protein.
Length = 707
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/105 (20%), Positives = 47/105 (44%)
Frame = +1
Query: 49 NKLVNNESGIDSSEDVVDPRQNAEDIIDEILAEFTESRSPPLRNGNGVPDNLFNMIQPPR 228
N+++ I SS D + + + D D++ E ++ R+ +G+ D F +
Sbjct: 606 NRVIPPSPRIPSSTDKKEMLKKSNDRFDKLREEVSDVRTQL----SGLEDTTFKKPKKLH 661
Query: 229 TRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRL 363
P + +D+D S+ + E++ +++SLK+R+
Sbjct: 662 FLEPDEESESDENGNDVDEFSEADDDDEDVDREMKVLVESLKNRV 706
>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
protein Y75B8A.24 protein.
Length = 2121
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 193 PDNLFNMIQPPRTRTPANSFSENATIDDIDPASDLGASIRNKCMELEEILQSLKSRLNH 369
P+ +N + T+TP +EN + ID A+ SI + EL+E+ ++ + L+H
Sbjct: 796 PEEWYNAVCETATKTPVLIATENLRSELIDNAAIRSDSISPQ--ELQEMRNTVLAELSH 852
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,515
Number of Sequences: 27780
Number of extensions: 243702
Number of successful extensions: 758
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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