Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3b16
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 127 IDEILAEFTESRSPP 171
           ID+ L E  ESRS P
Sbjct: 413 IDDFLVEMLESRSDP 427


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 127 IDEILAEFTESRSPP 171
           ID+ L E  ESRS P
Sbjct: 413 IDDFLVEMLESRSDP 427


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 246 FFFGERYDRRHRPCIRSGSFDQKQMY 323
           F FG   D R    I+SG FD  + Y
Sbjct: 48  FDFGS--DERRDAAIKSGEFDHTKNY 71


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +1

Query: 376 LDENIVLSPEANSMEAQLEHDLDTDCQEDLSLQEF 480
           + + +V++PE    +  + ++  TDC  + S   F
Sbjct: 166 MTDPLVVNPEIELPQLDISNNYTTDCTIEYSTGNF 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,568
Number of Sequences: 438
Number of extensions: 3038
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)