Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3b11
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   356   1e-98
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    39   0.005
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    31   0.91 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.7  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.7  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   6.4  
Z30317-6|CAA82972.3|  193|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  356 bits (875), Expect = 1e-98
 Identities = 166/247 (67%), Positives = 196/247 (79%)
 Frame = +2

Query: 35  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 214
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 215 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 394
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 395 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 574
           LCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 575 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGK 754
           +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G 
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGA 241

Query: 755 GIRLTIA 775
           GIRL+IA
Sbjct: 242 GIRLSIA 248


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = +1

Query: 607 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 771
           HH    E      H  H G HGTH  H          GH G  H A A  GH  HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580



 Score = 36.3 bits (80), Expect = 0.024
 Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +1

Query: 598 ARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 771
           A  HH    E      H  H G HGTH  H          GH G  H A A  GH   H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEH 522



 Score = 35.5 bits (78), Expect = 0.042
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = +1

Query: 607 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 771
           HHR   E        AH G HGTH  H  E   H+   H G H +     H P H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAH 454



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
 Frame = +1

Query: 577 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 747
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE G H   A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAH-HGA 701

Query: 748 RQGH 759
             GH
Sbjct: 702 HHGH 705



 Score = 33.1 bits (72), Expect = 0.23
 Identities = 26/105 (24%), Positives = 33/105 (31%), Gaps = 2/105 (1%)
 Frame = +1

Query: 463 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARG-HHRVPRETSR 636
           HH  +   +  +  H P  H ++ ++G H          H     G  G HH  P     
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518

Query: 637 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 771
              H  H   HG H  H      H   G  G H       H P H
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAH 560



 Score = 32.7 bits (71), Expect = 0.30
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = +1

Query: 646 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHH 771
           H AH   HG H RH  E    H+   H G H      GH   H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGHHGEH 432



 Score = 31.1 bits (67), Expect = 0.91
 Identities = 23/88 (26%), Positives = 28/88 (31%)
 Frame = +1

Query: 508 PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRH 687
           P  H ++ ++G+H        Y       GA  HH  P           H G HG H  H
Sbjct: 600 PAHHGHHGEHGVHHG-HHGAGYGAHHGHHGAH-HHHAPHHEHHEHHGDHHHGSHGVHHGH 657

Query: 688 EVEQRVHNRQGHEGVHLAAARQGHPPHH 771
                     GH G H       H P H
Sbjct: 658 HGTHHSLAHHGHHGGHGTHHGAHHSPAH 685



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/92 (26%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
 Frame = +1

Query: 508 PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARG-HHRVPRETSRLLRHCAHQGLHGTHLR 684
           P  H ++ ++G H          H     G  G HH  P        H +H   HG H  
Sbjct: 536 PAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHES 592

Query: 685 HEVEQRV---HNRQGHEGVHLAAARQGHPPHH 771
           H         H   G  GVH      G+  HH
Sbjct: 593 HGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHH 624



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +1

Query: 604 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 735
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +1

Query: 646 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHH 771
           HC   G HG H       R H   G  G      R GH  PPHH
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHH 402



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +1

Query: 646 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 771
           HC    G HG    H  + R  +R GH   H    R   PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 347 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 478
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 565 LVYDHGRP*LGARGHHRVPRETSRLLRH 648
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 565 LVYDHGRP*LGARGHHRVPRETSRLLRH 648
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 758 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 669
           C C+ A  C P CP   + + CS T  R C+P
Sbjct: 54  CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 504  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 340
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>Z30317-6|CAA82972.3|  193|Caenorhabditis elegans Hypothetical
           protein T16G12.3 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +1

Query: 577 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG 756
           HG P LG++ H+    ++       AH+ LH        E+ VH  QG++     A   G
Sbjct: 51  HGHPSLGSQSHNLTSAQSEG---RNAHKDLH--------ERHVHPSQGYQRHGSKAPAHG 99

Query: 757 HP 762
           HP
Sbjct: 100 HP 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,696,494
Number of Sequences: 27780
Number of extensions: 459156
Number of successful extensions: 1446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)