Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3b08
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 310 1e-85
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 113 3e-26
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 46 6e-06
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 44 2e-05
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 33 0.057
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 30 0.31
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.2
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.9
SPAC24C9.16c |cox8||cytochrome c oxidase subunit VIII|Schizosacc... 27 3.8
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 26 5.0
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 26 6.6
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 6.6
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 8.7
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 8.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 8.7
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 310 bits (761), Expect = 1e-85
Identities = 144/167 (86%), Positives = 156/167 (93%)
Frame = +3
Query: 249 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 428
E VYISSLALLKML+HGR G PMEVMGLMLGEFVDD+TVRV+DVFAMPQ+GTGVSVEAVD
Sbjct: 28 ECVYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVD 87
Query: 429 PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPI 608
PVFQ M+DMLKQTGRPEMVVGWYHSHPGFGCWLS VDINTQQSFE L+ RAVAVVVDPI
Sbjct: 88 PVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPI 147
Query: 609 QSVKGKVVIDAFRLINSNMMVLGQEPRQTTSNLGHLQKPSVQALIHG 749
QSVKGKVVIDAFRLIN + +++GQEPRQTTSNLGH+ KPS+QALIHG
Sbjct: 148 QSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHG 194
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 113 bits (272), Expect = 3e-26
Identities = 59/134 (44%), Positives = 86/134 (64%), Gaps = 3/134 (2%)
Frame = +3
Query: 255 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDPV 434
V IS++ALLKML+H G+P+EVMG + G+ V+ ++ ++D FA+P GT V A +
Sbjct: 35 VKISAVALLKMLRHVSQGMPLEVMGYVQGK-VEGASLIILDSFALPVEGTETRVNAHEEA 93
Query: 435 --FQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPI 608
+ + + K R E V+GWYHSHP +GCWLSGVD+ TQ+ + + VAVV+DP
Sbjct: 94 QEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPK 153
Query: 609 QSVKGKVV-IDAFR 647
+S++ V I AFR
Sbjct: 154 RSLESPYVNIGAFR 167
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 46.0 bits (104), Expect = 6e-06
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = +3
Query: 483 MVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKG 623
+ +GW H+HP C++S VD++T S++ + A+A+V+ P ++ G
Sbjct: 335 LTLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAPSKNTSG 381
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 44.4 bits (100), Expect = 2e-05
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +3
Query: 249 EQVYISSLALLKML-KHGRA--GVPMEVMGLMLGEFVDDYTVRVIDVFAMP--QTGTGVS 413
+QV + L LL + + R+ G V+G++LG+ D V V + +A+P + S
Sbjct: 15 QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGD-VVNVANSYAIPFEEDEKNAS 73
Query: 414 VEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHP 512
V +D F M +M K+ E +VGWYH+ P
Sbjct: 74 VWFLDHNFMESMNEMFKKINANEKLVGWYHTGP 106
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 32.7 bits (71), Expect = 0.057
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +3
Query: 255 VYISSLALLKMLKHG--RAGVPMEVMGLMLGEFVDD-YTVRVIDVFAMPQTGTGVSVEAV 425
+ I L +L H ++ V+G +LG +D + + FA+P + VE V
Sbjct: 23 IVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE-V 81
Query: 426 DPVFQAKMLDMLKQTGRPEMVVGWYHSHP 512
+ + M + + E+VVGWY + P
Sbjct: 82 EMEYHRAMYHLHLKANPREVVVGWYATSP 110
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 30.3 bits (65), Expect = 0.31
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 676 PSTIIFELIRRNASITTLPFTDWMGSTTTATARSD 572
P+TII E +RR +I + T W S + +RSD
Sbjct: 294 PTTIIAEELRRKRNIQEMSETSWKPSIAESASRSD 328
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 424 TASTDTPVPVCGIANTSITRTV*SSTNSPSMRPITSIGT 308
+AST T VP NTSIT S ++S S S T
Sbjct: 135 SASTSTAVPTTEARNTSITEPANSPSSSSSSASTKSTAT 173
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 336 LGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDP 431
+G++ DD+ V VF +P+T + ++DP
Sbjct: 142 MGDWQDDFQDAVNSVFGLPETPKTIEESSLDP 173
>SPAC24C9.16c |cox8||cytochrome c oxidase subunit
VIII|Schizosaccharomyces pombe|chr 1|||Manual
Length = 66
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 176 KKTIHFSFYLLTFTI*SSV-FLLVKFHNRN 90
KK + Y TF + S+ F++VK+HNRN
Sbjct: 36 KKPLPTLLYFGTFGVIFSIPFIVVKYHNRN 65
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 746 MYKSLYRWFLEVPEI*GGLSGLLSKYHHI*VDKAE 642
MY SLYR+F+E+ EI G + LS+ +D AE
Sbjct: 540 MY-SLYRFFVEMKEINGEFADKLSRVALDCIDAAE 573
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 500 IPSNNHFGSSCLFQHVQHLSLEDWINSLYRYSSPGL 393
IPS N FG CL + + + + + N+L + PG+
Sbjct: 51 IPSFNLFGKGCLAEAAKQIKMSGFKNTLI-VTDPGI 85
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 450 LDMLKQTGRPEMVVGWY-HSHP 512
+D++ Q GRP+++ GW H+ P
Sbjct: 831 VDVVGQAGRPKVITGWVTHTTP 852
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 436 KTGSTASTDTPVPVCGIANTSITRTV*SSTNSPSMRPITS 317
+T ST ST + V G ++ SIT T SST S + ++S
Sbjct: 585 ETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSS 624
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -1
Query: 460 NMSNILAWKTGSTASTDTPVPVCGIANTSITRTV*SSTNSPSMRPITSIGTPA 302
N + +L T + ST P P + T T T ++ P T GTP+
Sbjct: 171 NPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGTPS 223
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 8.7
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Frame = -1
Query: 601 STTTATARSDNASNDC*VLISTPDNQQPKPGCE*YHPTTISGR---PVCFNMSNILAWKT 431
STTT T S A+N S P + P S + P N S + +
Sbjct: 329 STTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPIT--S 386
Query: 430 GSTASTDTPVPVCGIANTSITRTV*SSTNSPSMRPITS 317
S ++ TP+ I NTS T S NS + PITS
Sbjct: 387 SSVLNSSTPITSSSILNTSTPITSSSVLNSST--PITS 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,528
Number of Sequences: 5004
Number of extensions: 67802
Number of successful extensions: 220
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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