Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3b08
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 323 1e-88
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 323 1e-88
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 102 3e-22
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 69 3e-12
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 56 4e-08
09_03_0137 + 12667763-12667930,12668715-12668779,12668879-126689... 50 3e-06
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 48 6e-06
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093... 43 2e-04
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802... 35 0.079
03_06_0131 - 31900700-31900992,31901039-31901720 30 1.7
03_02_0004 - 4869853-4871106 29 3.9
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849... 29 5.2
02_05_0376 + 28406547-28406870 28 6.9
02_02_0365 + 9488328-9488583,9489343-9489495,9491159-9491451,949... 28 6.9
11_01_0124 + 975921-976589,1010229-1011290 28 9.1
08_02_0511 + 18002930-18003104,18003137-18003180,18003194-18003793 28 9.1
05_01_0601 + 5390484-5391692 28 9.1
01_06_1172 - 35115248-35115874 28 9.1
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 323 bits (793), Expect = 1e-88
Identities = 152/167 (91%), Positives = 159/167 (95%)
Frame = +3
Query: 249 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 428
EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRV+DVFAMPQ+GTGVSVEAVD
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
Query: 429 PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPI 608
VFQ MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL+ RAVAVV+DPI
Sbjct: 87 HVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVIDPI 146
Query: 609 QSVKGKVVIDAFRLINSNMMVLGQEPRQTTSNLGHLQKPSVQALIHG 749
QSVKGKVVIDAFRLIN M+LGQEPRQTTSN+GHL KPS+QALIHG
Sbjct: 147 QSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHG 193
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 323 bits (793), Expect = 1e-88
Identities = 152/167 (91%), Positives = 159/167 (95%)
Frame = +3
Query: 249 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 428
EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRV+DVFAMPQ+GTGVSVEAVD
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
Query: 429 PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPI 608
VFQ MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL+ RAVAVV+DPI
Sbjct: 87 HVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVIDPI 146
Query: 609 QSVKGKVVIDAFRLINSNMMVLGQEPRQTTSNLGHLQKPSVQALIHG 749
QSVKGKVVIDAFRLIN M+LGQEPRQTTSN+GHL KPS+QALIHG
Sbjct: 147 QSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHG 193
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 102 bits (245), Expect = 3e-22
Identities = 68/157 (43%), Positives = 88/157 (56%), Gaps = 28/157 (17%)
Frame = +3
Query: 261 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTG--TGVSVEAVDPV 434
IS+LALLKM+ H RAG +EVMGLM G+ D V V+D FA+P G T V+ +A
Sbjct: 54 ISALALLKMVVHARAGGTIEVMGLMQGKCEGDAIV-VMDAFALPVEGTETRVNAQADAYE 112
Query: 435 FQAKMLDMLKQ-------------------------TGRPEMVVGWYHSHPGFGCWLSGV 539
+ + + KQ GR E VVGWYHSHPG+GCWLSG+
Sbjct: 113 YMVEYSTINKQIGSHHAIDHNVSEVSVFANTLMTDLAGRLENVVGWYHSHPGYGCWLSGI 172
Query: 540 DINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 647
D++TQ + E +AVV+DP ++V GKV I AFR
Sbjct: 173 DVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 209
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQ-TGTGVSVEAV 425
+ Y+S LALLK+L H P+ MG++LGE VD ++VRV+D F +P+ G G +A+
Sbjct: 24 QTAYVSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLPRCAGGGAFTQAI 83
Query: 426 DPVFQAKMLDMLKQTGR 476
DP + ML ML +T R
Sbjct: 84 DPRYIEGMLAMLNKTDR 100
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/81 (39%), Positives = 46/81 (56%)
Frame = +3
Query: 480 EMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINS 659
E VVGWY S+PGF S D ++FE L+ RA+ V VDP++S G ++AFR + S
Sbjct: 163 EGVVGWYRSNPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFRSVTS 222
Query: 660 NMMVLGQEPRQTTSNLGHLQK 722
+T+SN+G L +
Sbjct: 223 Y--------HETSSNVGALNR 235
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 55.6 bits (128), Expect = 4e-08
Identities = 39/137 (28%), Positives = 64/137 (46%)
Frame = +3
Query: 255 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDPV 434
V + LA+LK++KH P V G +LG V + V + F P +A
Sbjct: 35 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPMREDDEEADADGAN 93
Query: 435 FQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQS 614
+Q +M+ L++ VGWY S G + + I T +++ R V +V DP +S
Sbjct: 94 YQLEMMRCLREVNVDNNTVGWYQSCL-LGSFQTVELIETFMNYQENIRRCVCIVYDPSRS 152
Query: 615 VKGKVVIDAFRLINSNM 665
+G + + A +L +S M
Sbjct: 153 NQGVLALKALKLTDSFM 169
>09_03_0137 +
12667763-12667930,12668715-12668779,12668879-12668954,
12669142-12669339,12669716-12669795,12670670-12670913,
12671061-12671162,12671243-12671305,12671550-12671627,
12671905-12671967,12672163-12672209,12672328-12672496
Length = 450
Score = 49.6 bits (113), Expect = 3e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = +3
Query: 315 MEVMGLMLGEFVDDYTVRVI---DVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEM 485
+E G++ G D V+ D+ Q T S EA + + ++LD+ +Q G P
Sbjct: 297 LETCGIIAGTLRVDMDVKYFIATDLIIPKQESTSYSREATN---EEEILDIFEQLGSPSH 353
Query: 486 VVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDP 605
+ GW H+HP C++S VD++ S + A A+VV P
Sbjct: 354 L-GWIHTHPTQECFMSSVDLHNHYSNQKDLREAFAIVVAP 392
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 48.4 bits (110), Expect = 6e-06
Identities = 33/100 (33%), Positives = 50/100 (50%)
Frame = +3
Query: 306 GVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEM 485
G +E G+ LG D T V + Q T S +AV +L +Q+ P
Sbjct: 373 GNNVETCGI-LGASFRDGTYYVTMLIIPKQEATAHSCQAVSEEEIHAILS--EQSLYP-- 427
Query: 486 VVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDP 605
GW H+HP C+LS +D++TQ S++ + AVA+V+ P
Sbjct: 428 -AGWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAP 466
>01_05_0018 -
17208358-17208367,17208485-17208537,17209321-17209383,
17209971-17210045,17210090-17210104,17210983-17211045,
17211129-17211218,17211396-17211714,17211814-17211860,
17211949-17212054,17212539-17212592,17212806-17212912,
17212996-17213160,17213383-17213476,17213572-17213636,
17213841-17213969
Length = 484
Score = 43.2 bits (97), Expect = 2e-04
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 489 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK 620
+GW H+HP C+LS +D++ S++ + A+A+V+ P + +
Sbjct: 439 LGWIHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTTR 482
>01_03_0156 +
13279354-13279479,13279722-13279790,13280102-13280272,
13280358-13280464,13281332-13281437,13281540-13281586,
13283429-13283747,13283917-13284006,13284095-13284157,
13284303-13284377,13285379-13285441,13286677-13286700,
13286926-13286978,13287687-13287861
Length = 495
Score = 34.7 bits (76), Expect = 0.079
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +3
Query: 315 MEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVG 494
+E G++ G + T V + Q T S EA + + ++ D+ Q +G
Sbjct: 335 LETCGVLAGT-LKKRTFYVTALIIPKQKSTSDSCEATN---EDELFDV--QDKGSLFTLG 388
Query: 495 WYHSHPGFGCWLSGVDINTQQSFE 566
W H+HP C+LS +D++ S++
Sbjct: 389 WIHTHPTQSCFLSSIDLHNHYSYQ 412
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 485 HFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWH 387
HFG LF+ Q+ S +D INSL +SP L H
Sbjct: 205 HFGGQPLFRLSQNSSAKDIINSLAALTSPVLPH 237
>03_02_0004 - 4869853-4871106
Length = 417
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 399 GTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL 572
G G++ + ML K T R YH G+GC + GV +N Q FE +
Sbjct: 302 GLGIAAATAGSLQTLAMLFRPKTTNRYRKYWKSYHHLVGYGCVVVGV-VNVFQGFEVM 358
>03_05_1138 +
30684014-30684386,30684480-30684865,30684870-30684962,
30684963-30685108,30685211-30685454,30685562-30685666,
30685774-30685956,30686052-30686738
Length = 738
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 172 FFVLVVEWRAYHRRHLLPMLQQ 237
F ++++EW A RR LLP+L++
Sbjct: 28 FLIVLLEWHAQVRRRLLPLLRR 49
>02_05_0376 + 28406547-28406870
Length = 107
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -3
Query: 527 PTTKARM*MIPSNNHFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWHSKYINNSNC 360
P+ KA + P N+H G++ + + W + Y+ P L S + ++S+C
Sbjct: 6 PSCKATICRTPGNHHHGTTSELRAASRRASSLWEEMVLPYNFPPLSPSYFPSSSSC 61
>02_02_0365 +
9488328-9488583,9489343-9489495,9491159-9491451,
9491538-9492105,9492503-9493011
Length = 592
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 458 HVQHLSLEDWINSLYRYSSPG 396
H+++LSL + +N Y+YSS G
Sbjct: 151 HIENLSLSELLNGTYKYSSLG 171
>11_01_0124 + 975921-976589,1010229-1011290
Length = 576
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 525 WLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINSNMMVLG 677
W+S DIN FE+L + + +D I ++K D R + + V G
Sbjct: 226 WISWRDINETPEFESLQDLFKTIGIDRIVTLKQDYNEDLIRQFYATVWVAG 276
>08_02_0511 + 18002930-18003104,18003137-18003180,18003194-18003793
Length = 272
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 525 WLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINSNMMVLG 677
W+S DIN FE L + V +D I ++K D R + + V G
Sbjct: 108 WISWRDINETPEFEGLQDLFKTVGIDRIVTLKQDYNEDLIRQFYATVWVAG 158
>05_01_0601 + 5390484-5391692
Length = 402
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 516 FGCWLSGVDINTQQS--FEALSERAVAVVVDP 605
FG W++G ++ QS +EAL AVV DP
Sbjct: 23 FGVWINGAASSSPQSQEYEALQALKAAVVEDP 54
>01_06_1172 - 35115248-35115874
Length = 208
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +3
Query: 297 GRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 428
G EV + LGEF D VRV +P+ G G V VD
Sbjct: 115 GSPAAAAEVCAICLGEFADGEKVRV-----LPRCGHGFHVRCVD 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,713,315
Number of Sequences: 37544
Number of extensions: 441777
Number of successful extensions: 1096
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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