Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3b08
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 327 4e-90
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 258 3e-69
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 124 7e-29
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 40 0.001
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 40 0.002
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 35 0.071
Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z38112-6|CAA86235.2| 870|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z35637-7|CAA84690.2| 870|Caenorhabditis elegans Hypothetical pr... 29 3.5
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein. 29 3.5
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 29 4.7
AF022974-2|AAC48038.1| 344|Caenorhabditis elegans Seven tm rece... 28 6.2
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 8.1
U80838-4|AAT48616.1| 648|Caenorhabditis elegans Hypothetical pr... 28 8.1
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF125442-12|AAD12797.1| 260|Caenorhabditis elegans Hypothetical... 28 8.1
AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 11 protein.
Length = 312
Score = 327 bits (804), Expect = 4e-90
Identities = 156/167 (93%), Positives = 159/167 (95%)
Frame = +3
Query: 249 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 428
E VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTV VIDVFAMPQ+GTGVSVEAVD
Sbjct: 31 ETVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVD 90
Query: 429 PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPI 608
PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALS+RAVAVVVDPI
Sbjct: 91 PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPI 150
Query: 609 QSVKGKVVIDAFRLINSNMMVLGQEPRQTTSNLGHLQKPSVQALIHG 749
QSVKGKVVIDAFR IN M L QEPRQTTSNLGHLQKPS+QALIHG
Sbjct: 151 QSVKGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIHG 197
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 258 bits (632), Expect = 3e-69
Identities = 122/172 (70%), Positives = 144/172 (83%), Gaps = 5/172 (2%)
Frame = +3
Query: 249 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 428
E V ISSLALLKML+H R+G+P+EVMGLMLG+FVDDYT+ V DVFAMPQ+GT V+VE+VD
Sbjct: 27 ETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVD 86
Query: 429 PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPI 608
PV+Q K +D+LK GR E VVGWYHSHPGFGCWLS VD+NTQQSFEAL RAVAVVVDPI
Sbjct: 87 PVYQTKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPI 146
Query: 609 QSVKGKVVIDAFRLINS-NMMVL----GQEPRQTTSNLGHLQKPSVQALIHG 749
QSVKGKV++DAFR +N N+ + EPRQTTSNLGHL KPS+ +++HG
Sbjct: 147 QSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHG 198
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 124 bits (299), Expect = 7e-29
Identities = 61/136 (44%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Frame = +3
Query: 249 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 428
+Q+ IS++ALLKM H + G +E+MGL+ G +D + ++DVFA+P GT V A
Sbjct: 54 KQIKISAIALLKMTMHAKRGGNLEIMGLLQGR-IDANSFIILDVFALPVEGTETRVNAQA 112
Query: 429 PVFQAKML--DMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVD 602
++ + +M GR E VVGWYHSHPG+GCWLSG+D++TQ + E VA+V+D
Sbjct: 113 QAYEYMTVYSEMCDTEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVID 172
Query: 603 PIQSVK-GKVVIDAFR 647
P++++ GKV I AFR
Sbjct: 173 PLRTMSAGKVDIGAFR 188
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Frame = +3
Query: 252 QVYISSLALLKMLKH----GRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMP--QTGTGVS 413
+V + L LL ++ H + V+G++LG D T+ + + FA+P + S
Sbjct: 40 KVTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKS 99
Query: 414 VEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAV 593
+D + M M + E +VGWYH+ P L DI + + V V
Sbjct: 100 TWFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPK----LHKNDIAINEQLKRFCPNPVLV 155
Query: 594 VVD 602
++D
Sbjct: 156 IID 158
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +3
Query: 438 QAKMLDMLKQTGRPEM---VVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPI 608
Q +MLDML++ + +VG+Y SH FG S + + ++A+ V ++ DPI
Sbjct: 90 QHEMLDMLRKFRTMNIDYEIVGFYQSHQ-FGAGFSHDLVESMFDYQAMGPENVVLIYDPI 148
Query: 609 QSVKGKVVIDAFRL 650
++ +G++ + A+RL
Sbjct: 149 KTRQGQLSLRAWRL 162
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 34.7 bits (76), Expect = 0.071
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 1/128 (0%)
Frame = -1
Query: 676 PSTIIFELIRRNASITTLPFTDWMGSTTTATARSDNASNDC*VLISTPDNQQPKPGCE*Y 497
P+T E + TT P T TTT T + + +TP P
Sbjct: 143 PTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPT-TTTTTPTTTTTAPTTTTT 201
Query: 496 HPTTISGRPVCFNMSNILAWKTGSTASTDTPVPVCGIANTSITRTV*SSTN-SPSMRPIT 320
PTT + P T +T +T T P + T T ++T+ + + P T
Sbjct: 202 TPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTT 261
Query: 319 SIGTPARP 296
+ T +P
Sbjct: 262 TTQTTTKP 269
Score = 30.7 bits (66), Expect = 1.2
Identities = 30/124 (24%), Positives = 45/124 (36%)
Frame = -1
Query: 676 PSTIIFELIRRNASITTLPFTDWMGSTTTATARSDNASNDC*VLISTPDNQQPKPGCE*Y 497
P+T TT P T +TTT T + + +TP P
Sbjct: 125 PTTTTTTPTTTTTETTTTPTTTTTETTTTPTTTTTTPTTTT----TTPTTTTTTPTTTTT 180
Query: 496 HPTTISGRPVCFNMSNILAWKTGSTASTDTPVPVCGIANTSITRTV*SSTNSPSMRPITS 317
PTT + P + T +T +T TP + T T T ++T + + P T+
Sbjct: 181 TPTTTTTTPTTTTTAPTTTTTTPTTTTT-TPTTTTTVPTT--TTTTPTTTTTTTTTPTTT 237
Query: 316 IGTP 305
TP
Sbjct: 238 TTTP 241
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 1/110 (0%)
Frame = -1
Query: 631 TTLPFTDWMGSTTTATARSDNASNDC*VLISTPDNQQPKPGCE*YHPTTISGRPVCFNMS 452
TT P T TTT T + + +TP P PTT + P +
Sbjct: 172 TTTPTTTTTTPTTTTTTPTTTTTAPT-TTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTT 230
Query: 451 NILAWKTGST-ASTDTPVPVCGIANTSITRTV*SSTNSPSMRPITSIGTP 305
T +T +T TP T+ T +T P+ T TP
Sbjct: 231 TTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTP 280
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 4/113 (3%)
Frame = -1
Query: 631 TTLPFTDWMGSTTTATARSDNASNDC*VLISTPDNQQPKPGCE*YHPTTISGRPVCFNMS 452
TT P T TTT T + + +TP P PTT + P +
Sbjct: 122 TTTPTTTTTTPTTTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTT 181
Query: 451 NILAWKTGSTA----STDTPVPVCGIANTSITRTV*SSTNSPSMRPITSIGTP 305
T +T +T T P + T TV ++T + T+ TP
Sbjct: 182 PTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTP 234
>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -3
Query: 485 HFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWHSKYINNSNCIVIYKLSEHETHNLHRNA 306
++ + L QH +HL L+ I LY+Y L S+YI IV+ K +++ H A
Sbjct: 1345 NYSLALLTQHTRHLWLQSLILILYKYRFDQLPVSEYIVRLIGIVV-KTLQNQVHECSDAA 1403
Query: 305 STS 297
S
Sbjct: 1404 DQS 1406
>Z38112-6|CAA86235.2| 870|Caenorhabditis elegans Hypothetical
protein E03A3.6b protein.
Length = 870
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -3
Query: 485 HFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWHSKYINNSNCIVIYKLSEHETHNLHRNA 306
++ + L QH +HL L+ I LY+Y L S+YI IV+ K +++ H A
Sbjct: 126 NYSLALLTQHTRHLWLQSLILILYKYRFDQLPVSEYIVRLIGIVV-KTLQNQVHECSDAA 184
Query: 305 STS 297
S
Sbjct: 185 DQS 187
>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -3
Query: 485 HFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWHSKYINNSNCIVIYKLSEHETHNLHRNA 306
++ + L QH +HL L+ I LY+Y L S+YI IV+ K +++ H A
Sbjct: 1345 NYSLALLTQHTRHLWLQSLILILYKYRFDQLPVSEYIVRLIGIVV-KTLQNQVHECSDAA 1403
Query: 305 STS 297
S
Sbjct: 1404 DQS 1406
>Z35637-7|CAA84690.2| 870|Caenorhabditis elegans Hypothetical
protein E03A3.6b protein.
Length = 870
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -3
Query: 485 HFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWHSKYINNSNCIVIYKLSEHETHNLHRNA 306
++ + L QH +HL L+ I LY+Y L S+YI IV+ K +++ H A
Sbjct: 126 NYSLALLTQHTRHLWLQSLILILYKYRFDQLPVSEYIVRLIGIVV-KTLQNQVHECSDAA 184
Query: 305 STS 297
S
Sbjct: 185 DQS 187
>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
Length = 2084
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -3
Query: 485 HFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWHSKYINNSNCIVIYKLSEHETHNLHRNA 306
++ + L QH +HL L+ I LY+Y L S+YI IV+ K +++ H A
Sbjct: 1348 NYSLALLTQHTRHLWLQSLILILYKYRFDQLPVSEYIVRLIGIVV-KTLQNQVHECSDAA 1406
Query: 305 STS 297
S
Sbjct: 1407 DQS 1409
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 421 ASTDTPVPVCGIANTSITRTV*SSTNSPSMRPITSIGTPARPC 293
A +DT +PVC +AN + T SS + I G + C
Sbjct: 1746 AESDTCLPVCSVANVCSSGTCVSSNTTAGYECICPAGKTGKNC 1788
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 421 ASTDTPVPVCGIANTSITRTV*SSTNSPSMRPITSIGTPARPC 293
A +DT +PVC +AN + T SS + I G + C
Sbjct: 1746 AESDTCLPVCSVANVCSSGTCVSSNTTAGYECICPAGKTGKNC 1788
>AF022974-2|AAC48038.1| 344|Caenorhabditis elegans Seven tm
receptor protein 209 protein.
Length = 344
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 529 YLVWISTLNSHLKHYRNVQ*LLWLIPS 609
Y W + N HLK + ++ LW +PS
Sbjct: 113 YRYWAVSGNKHLKEFEGLRIFLWTLPS 139
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
protein R10E8.6 protein.
Length = 1696
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -3
Query: 500 IPSNNHFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWHSKYINNSNCIVIYKLSE 336
IPSN+ C +H + D+I S+ Y PG + I+ + + +L +
Sbjct: 480 IPSNSLKADGCCISFNRHPLITDYITSVLSYFQPGTLENIAIHTAPHTIAMELED 534
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
protein C09F9.2 protein.
Length = 1642
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 736 ACTDGFWRCPRFEVVCLGSCPSTIIFELIRRNASITTLP 620
AC G+ R P+ + V G CP+ + ++ A T +P
Sbjct: 529 ACLQGYARNPQGQCVYWGDCPTDVQPTTLKSTAPTTPVP 567
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 8.1
Identities = 29/126 (23%), Positives = 51/126 (40%)
Frame = -1
Query: 682 SCPSTIIFELIRRNASITTLPFTDWMGSTTTATARSDNASNDC*VLISTPDNQQPKPGCE 503
S P+T E+ +S+ ++ TTT+T + ++++ ++P
Sbjct: 360 SIPTTTTPEITSTLSSLPDNAICSYLDETTTSTTFTTT-------MLTSTTTEEPSTSTT 412
Query: 502 *YHPTTISGRPVCFNMSNILAWKTGSTASTDTPVPVCGIANTSITRTV*SSTNSPSMRPI 323
T+ S + L T STAST T P TS + + +ST + S
Sbjct: 413 TTEVTSTSSTVTTTEPTTTL---TTSTASTSTTEPSTSTVTTSPSTSPVTSTVTSSSSSS 469
Query: 322 TSIGTP 305
T++ TP
Sbjct: 470 TTVTTP 475
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 8.1
Identities = 29/126 (23%), Positives = 51/126 (40%)
Frame = -1
Query: 682 SCPSTIIFELIRRNASITTLPFTDWMGSTTTATARSDNASNDC*VLISTPDNQQPKPGCE 503
S P+T E+ +S+ ++ TTT+T + ++++ ++P
Sbjct: 360 SIPTTTTPEITSTLSSLPDNAICSYLDETTTSTTFTTT-------MLTSTTTEEPSTSTT 412
Query: 502 *YHPTTISGRPVCFNMSNILAWKTGSTASTDTPVPVCGIANTSITRTV*SSTNSPSMRPI 323
T+ S + L T STAST T P TS + + +ST + S
Sbjct: 413 TTEVTSTSSTVTTTEPTTTL---TTSTASTSTTEPSTSTVTTSPSTSPVTSTVTSSSSSS 469
Query: 322 TSIGTP 305
T++ TP
Sbjct: 470 TTVTTP 475
>U80838-4|AAT48616.1| 648|Caenorhabditis elegans Hypothetical
protein F47F6.5 protein.
Length = 648
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 434 DWINSLYRYSSPGLWHSKYINN 369
DWI+ +YR+ P YINN
Sbjct: 447 DWIDEVYRFERPSRVFCHYINN 468
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -1
Query: 682 SCPSTIIFELIRRNASITTLPFTDWMGSTTTATARSDNASNDC*VLISTPDNQQPKPGCE 503
+ PST + +TLP T+ G +TT++A + + VL N++P+P +
Sbjct: 1334 TAPSTEVTSPEGSGTEESTLPPTEGSGESTTSSAPTVEPAT---VLPPQNRNEKPEPTKD 1390
Query: 502 *YH-PTTISGRP 470
+ PTT +G P
Sbjct: 1391 TFALPTTTTGAP 1402
>AF125442-12|AAD12797.1| 260|Caenorhabditis elegans Hypothetical
protein H04M03.12 protein.
Length = 260
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = -3
Query: 488 NHFGSSCLFQHVQHLSLEDWINSLYRYSSPGLWHSKYINNSNCIVIYKLSEHETHNLHRN 309
NH + + V+ L S+YRYS P + + I KL +H+TH
Sbjct: 86 NHLKNDSRVRRVKWRHLSSERVSIYRYSLPAITYEMSFIKFIIQEISKL-QHQTHFFLYK 144
Query: 308 ASTSMFQHFKEC 273
+ +H K C
Sbjct: 145 QNLLFLKHAKNC 156
>AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical
protein W10G11.5 protein.
Length = 345
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 433 TGSTASTDTPVPVCGIANTSITRTV*SSTNSPSMRPITSIGT 308
+ +TAST TP P+ T+ T T ++T P+ T I T
Sbjct: 79 SSTTASTVTPTPILTTVTTTSTTTTVTTTPIPTTVTSTHIPT 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,639,651
Number of Sequences: 27780
Number of extensions: 380895
Number of successful extensions: 1061
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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