Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3b08
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.3  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   7.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   7.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.1  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   7.1  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   7.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.3  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 496 HPTTISGRPVCFN 458
           HPT I  + VCFN
Sbjct: 72  HPTIIMPQDVCFN 84


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -2

Query: 216 VAPVISPPFHHQDEEDDPFQFL 151
           + P + PP HH   +    Q L
Sbjct: 343 MGPTMGPPHHHHHHQTQSLQHL 364


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 239 HCWSIGRRWRL**ARHSTTKTKKTIHFSFYL 147
           HC    +R R    R+ T + +K  H++ YL
Sbjct: 3   HCVPERKRGRQTYTRYQTLELEKEFHYNRYL 33


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 544 STLNSHLKHYRNV 582
           S LNSHLK + NV
Sbjct: 30  SMLNSHLKSHSNV 42


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 407 SSPGLWHSKYINNSNCIVIYKLSEHETHNLHRN 309
           +S G     +   S+C   Y+ S HE  N +RN
Sbjct: 215 NSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRN 247


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 303 AGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGV 410
           AGVPM +M L LG+ +   T+  + VF +     G+
Sbjct: 68  AGVPMFLMELSLGQMM---TIGGLGVFKIAPIFKGI 100


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 303 AGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGV 410
           AGVPM +M L LG+ +   T+  + VF +     G+
Sbjct: 121 AGVPMFLMELSLGQMM---TIGGLGVFKIAPIFKGI 153


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 457 C*NKQDDPKWLLDG 498
           C  K D PK LLDG
Sbjct: 43  CSKKNDTPKELLDG 56


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 457 C*NKQDDPKWLLDG 498
           C  K D PK LLDG
Sbjct: 17  CSKKNDTPKELLDG 30


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 683 AQTNHLKSRAPPETICTSSYT 745
           AQ  H   +AP ETI +S +T
Sbjct: 291 AQPVHSAYKAPEETIISSVFT 311


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -2

Query: 195 PFHHQDEEDDPFQFLPLNFHN 133
           P+H   +ED      P  FH+
Sbjct: 391 PYHPSTQEDSEEHLTPKRFHS 411


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -2

Query: 195 PFHHQDEEDDPFQFLPLNFHN 133
           P+H   +ED      P  FH+
Sbjct: 391 PYHPSTQEDSEEHLTPKRFHS 411


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 368 SNCIVIYKLSEHETHNLHRN 309
           S+C   Y+ S HE  N +RN
Sbjct: 228 SSCHSRYEDSRHEDRNSYRN 247


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 368 SNCIVIYKLSEHETHNLHRN 309
           S+C   Y+ S HE  N +RN
Sbjct: 228 SSCHSRYEDSRHEDRNSYRN 247


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 368 SNCIVIYKLSEHETHNLHRN 309
           S+C   Y+ S HE  N +RN
Sbjct: 228 SSCHSRYEDSRHEDRNSYRN 247


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 368 SNCIVIYKLSEHETHNLHRN 309
           S+C   Y+ S HE  N +RN
Sbjct: 228 SSCHSRYEDSRHEDRNSYRN 247


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 455 HVETNRTTRNGCWMVSFTSWLW 520
           +V TN+T   G  +  +  W W
Sbjct: 89  NVITNKTGNGGPLLAPYPDWTW 110


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 368 SNCIVIYKLSEHETHNLHRN 309
           S+C   Y+ S HE  N +RN
Sbjct: 228 SSCHSRYEDSRHEDRNSYRN 247


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 618 KGKVVIDAFRLINSNMMVL 674
           +GK+++D F ++N  +M L
Sbjct: 260 QGKLIVDFFMILNEIIMKL 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,653
Number of Sequences: 438
Number of extensions: 4810
Number of successful extensions: 28
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)