Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3b07
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.0  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   7.0  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   7.0  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.3  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    25   9.3  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/78 (20%), Positives = 35/78 (44%)
 Frame = +2

Query: 266 KLAVQGRYILPHRKENKMDRSYNKPIRKHRPKFEQIVSQDSPVENHGISAFTFADIHDDV 445
           K  + G+  LP+ ++ +   S    +R    KFE+ V     V   G + F F+ +   +
Sbjct: 573 KTVLDGQQPLPNPQKRQKRLSNQVELRNQWAKFEKEVEDFEKVLTGGSNGFMFSFVEGAL 632

Query: 446 TSSIETKPNIRINDITTA 499
             ++ +   + +++I  A
Sbjct: 633 VKAVRSGHWVLLDEINLA 650


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 4   WPERN*N*YHFTSENGNGAQTSSSRVFYSSLY 99
           WPE     Y+F  ENG G   ++S   YS  Y
Sbjct: 229 WPEIQD--YNFAGENGMGVYGAASAYTYSDAY 258


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 246 LSLMMSKYS-FAVASPAGSSNRSMQSL*ACSKYIIDCFT 133
           LS + S +S F+ A    S  R+ Q + A  +YI  CFT
Sbjct: 114 LSNVSSVWSIFSTAPSEASETRNKQRILAILRYIYSCFT 152


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 62  KRLVLEFFIPHFIAMARSSEKFEAVKQSIIYLEQAQRLCMLLLEEPAGDATANE 223
           +RL++EF I +   + R  EK ++ +Q    L+Q +    L  +    D   NE
Sbjct: 597 RRLIVEFAIENIQVVKRRQEKEKSFRQKAKQLKQQEDEDNLKRKRSESDVEDNE 650


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +2

Query: 2   AGQNEIKTNIILPAKMETERKRLVLEFFIPHFIAMARSSEKFEAVKQSIIYLEQAQRLCM 181
           A ++E   N++LP  +       +LE+F   +  M+++ ++FE    S  ++ Q  R+C+
Sbjct: 216 ATKSENYPNLVLPGPLLVTS---MLEYFRSVYPQMSKNMKRFEFRLLSPAFVNQPLRICI 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,421
Number of Sequences: 5004
Number of extensions: 55104
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)