Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3b07
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 33 0.19
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 32 0.45
07_03_0647 - 20253380-20253505,20253718-20253727,20253864-202539... 31 0.78
07_03_0642 - 20216944-20217069,20217282-20217291,20217428-202175... 31 0.78
09_04_0433 - 17512299-17512340,17512832-17512838,17513389-175135... 31 1.0
10_02_0028 + 4331612-4331810,4332588-4333588 30 2.4
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 30 2.4
05_02_0131 - 6919143-6920125,6920334-6920529 29 4.2
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888 29 4.2
05_02_0128 - 6890918-6891900,6892929-6893124 29 5.5
12_01_0686 - 5855216-5858263 28 9.6
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 33.5 bits (73), Expect = 0.19
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 155 LEQAQRLCML--LLEEPAGDATANEYLDIIRDKLSDCQRKLAVQGRYILPHRKENKMDRS 328
L +R+ +L L +E A E+LD DKL D Q+K + + + +M S
Sbjct: 1172 LNMQERIYLLKFLCDEMLNTALIREHLDQCSDKLGDLQQKFRASNFELKDLKYKEEMRTS 1231
Query: 329 YNKPIRKHRPKFEQIVSQDSPVEN 400
Y + R + + + + PVEN
Sbjct: 1232 YARQSRSSKTE-QHFNNSSGPVEN 1254
>03_02_0143 -
5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 32.3 bits (70), Expect = 0.45
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = +2
Query: 158 EQAQRLCMLLLEEPAGDATANEYLDIIRDKLSDCQRKLAVQGRYILPHRKE 310
E A+ LC +LL AGD A E LD++ D + VQ +L HRKE
Sbjct: 241 ELAKALCRVLLSNKAGDEIAGELLDLVGDAAFE-----TVQD--LLSHRKE 284
>07_03_0647 -
20253380-20253505,20253718-20253727,20253864-20253977,
20254063-20254382
Length = 189
Score = 31.5 bits (68), Expect = 0.78
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 302 RKENKMDRSYNKPIRKHRPKFE-QIVSQDSPVENHGISAFTFADIHDDVTSSIETKP 469
R E K+ RS + P+ P+ Q V+ P HG A +HD +T+SI +P
Sbjct: 31 RSEGKVKRSDSVPVASITPRVALQTVNGGKPQRKHGNRQQIAAALHDWLTTSIGGQP 87
>07_03_0642 -
20216944-20217069,20217282-20217291,20217428-20217541,
20217627-20217946
Length = 189
Score = 31.5 bits (68), Expect = 0.78
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 302 RKENKMDRSYNKPIRKHRPKFE-QIVSQDSPVENHGISAFTFADIHDDVTSSIETKP 469
R E K+ RS + P+ P+ Q V+ P HG A +HD +T+SI +P
Sbjct: 31 RSEGKVKRSDSVPVASITPRVALQTVNGGKPQRKHGNRQQIAAALHDWLTTSIGGQP 87
>09_04_0433 -
17512299-17512340,17512832-17512838,17513389-17513574,
17513656-17513819,17514732-17514837,17514922-17515013,
17515277-17515390,17515399-17515528,17515604-17515765,
17516460-17516512,17516605-17516697
Length = 382
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 614 FHYKTRFQINIHLILLKVIIFCNWYSTYEITKTIILIP 501
F + T I I L + V+ FC S Y++T T++L+P
Sbjct: 309 FCFATVLSIFIALCSIVVLTFCKNESQYQVTVTVLLVP 346
>10_02_0028 + 4331612-4331810,4332588-4333588
Length = 399
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +2
Query: 212 TANEYLDIIRDKLSDCQRKLAVQGRYILPHRKENKMDRSYNKPIRKHRPKFE 367
T +E+L ++DK+ +K ++ RYI H E ++ R++ + I KH+P E
Sbjct: 51 TKSEHLTELKDKMKRICKKSGIEKRYI--HLDE-EIIRAHPEIIDKHQPSLE 99
>03_02_0348 +
7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +2
Query: 239 RDKLSDCQRKLAVQGRYILPHRKENKMDRSYNKPIRKHRPKFEQIVSQDSPVENHG--IS 412
RD + D Q LA LP NK+ S + P+ K + + ++ +SP N G +
Sbjct: 538 RDGVKDSQSVLA------LPGTPSNKLQLSDSSPLLKLQSRISSLLDSESPQNNAGNILD 591
Query: 413 AF--TFADIHDDVTSSIETK 466
+ DI D+ SS ++K
Sbjct: 592 SIRNILKDIEDEADSSNDSK 611
>05_02_0131 - 6919143-6920125,6920334-6920529
Length = 392
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 212 TANEYLDIIRDKLSDCQRKLAVQGRYILPHRKENKMDRSYNKPIRKHRPKFEQIV 376
T +E+L ++DK+ + ++ RYI H E K+ R + + I KH P E V
Sbjct: 50 TKSEHLTELKDKMKRICHRSGIEKRYI--HLDE-KLIREHPEIIDKHMPSLENRV 101
>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
Length = 748
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 137 KQSIIYLEQAQRL--CMLLLEEPAGDATANEYLDIIRDKLSDCQRKL 271
KQS+ Y E++ M LL E G N + DKL++CQ +
Sbjct: 582 KQSVHYKEESATADGSMQLLPEEEGKQLTNSAISAAADKLAECQETI 628
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 212 TANEYLDIIRDKLSDCQRKLAVQGRYILPHRKENKMDRSYNKPIRKHRPKFE 367
T +E+L ++DK+ + ++ RYI H E K+ R + + I KH P E
Sbjct: 50 TESEHLTELKDKMKRICHRSGIEKRYI--HLDE-KLIREHPEIIDKHMPSLE 98
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 290 ILPHRKENKMDRSYNKPIRKHRPKFEQIVSQDSPVENHGISAFTFADIHDDVTSSIETKP 469
I H+K +D S N I + P F SQDS +EN +S F + S++ +
Sbjct: 310 IFQHKKLRTIDLSKNPGISGNLPNF----SQDSSLENLSVSRTNFTGMIPSSISNLRSLK 365
Query: 470 NIRI 481
+ I
Sbjct: 366 KLGI 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,416,099
Number of Sequences: 37544
Number of extensions: 286902
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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