Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3b07
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical ...    33   0.17 
Z49909-16|CAB60995.1|  418|Caenorhabditis elegans Hypothetical p...    28   6.6  
U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical
           protein Y32B12B.3 protein.
          Length = 283

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -1

Query: 713 TIFLINKFKSLLGANSQIVLSI---RTKSYFTAIFTFHYKTRFQINIHLILLKVIIFCNW 543
           T F++     L    S ++LSI   R  + +  IF F Y  +F I+I +IL    I  + 
Sbjct: 81  TFFMLWPIIPLGIVRSILMLSINIDRLGALYFPIFYFKYHRKFPISIIVILTLTYILVDQ 140

Query: 542 YSTYEITKTIILIP 501
           Y T+E    II +P
Sbjct: 141 YVTFEYCNYIISVP 154


>Z49909-16|CAB60995.1|  418|Caenorhabditis elegans Hypothetical
           protein C14A4.14 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 338 PIRKHRPKFEQIVSQDSPVENHGISAFTFADIHDDVTSSIET 463
           P+++ R +  QI+++D  +++   S F F DI  D T    T
Sbjct: 104 PVKEPREESVQILAKDLELKDFDTSKFVFTDITFDATDQDRT 145


>U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical
           protein B0563.6b protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 680 LGANSQIVLSIRTKSYFTAIFTFHYKT--RFQINIHLILLKVIIFCNWYSTYEITK 519
           LGA   +V+++  + Y + +F  H++T    Q     I++  +I   +Y  Y IT+
Sbjct: 105 LGAGVYVVVALSLERYISIVFPMHFRTWNSPQRATRAIVIAFLIPAIFYVPYAITR 160


>U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical
           protein B0563.6a protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 680 LGANSQIVLSIRTKSYFTAIFTFHYKT--RFQINIHLILLKVIIFCNWYSTYEITK 519
           LGA   +V+++  + Y + +F  H++T    Q     I++  +I   +Y  Y IT+
Sbjct: 114 LGAGVYVVVALSLERYISIVFPMHFRTWNSPQRATRAIVIAFLIPAIFYVPYAITR 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,391
Number of Sequences: 27780
Number of extensions: 300941
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)