Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3b07
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.60 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 240 EISYLTVNGNLRCKVVTYYLIEKKT 314
           E+SY+ ++G L C +VT+ L+ + T
Sbjct: 693 ELSYVLLSGILLCYLVTFALVLRPT 717


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 177 ACFC*RNQLVMRLQ 218
           ACFC RN+L+M L+
Sbjct: 484 ACFCARNELMMILK 497


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 207 SPAGSSNRSMQSL*ACSKYIIDCFT 133
           SP    +RS  +   CS + + CFT
Sbjct: 277 SPPVKQHRSSSASTTCSGHTVRCFT 301


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 750 IMSA*QLNYCNFNNIFNKQ 694
           I+S+   NY N+NN +N +
Sbjct: 303 IISSNNYNYKNYNNNYNSK 321


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 750 IMSA*QLNYCNFNNIFNKQ 694
           I+S+   NY N+NN +N +
Sbjct: 314 IISSNNYNYKNYNNNYNSK 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,994
Number of Sequences: 438
Number of extensions: 4075
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)