Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3b06
         (614 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071155-1|AAL48777.1|  100|Drosophila melanogaster RE18615p pro...    87   1e-17
AJ249754-1|CAB56698.1|  100|Drosophila melanogaster sec61beta pr...    87   1e-17
AE013599-1924|AAF58229.1|  100|Drosophila melanogaster CG10130-P...    87   1e-17
AY094906-1|AAM11259.1|  383|Drosophila melanogaster RH12404p pro...    29   3.8  
AE014298-1745|AAF48135.2|  383|Drosophila melanogaster CG1488-PA...    29   3.8  
AE014298-1744|AAN09641.1|  483|Drosophila melanogaster CG1488-PB...    29   3.8  
AY118698-1|AAM50558.1|  570|Drosophila melanogaster AT19257p pro...    29   6.6  
AE014296-2960|AAN11700.1|  573|Drosophila melanogaster CG32181-P...    29   6.6  

>AY071155-1|AAL48777.1|  100|Drosophila melanogaster RE18615p
           protein.
          Length = 100

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 49/100 (49%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
 Frame = +1

Query: 160 MPQSPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXG---SGGMW 330
           MP   S+TSVGSGSRSP+K SA     SG                      G   +GGMW
Sbjct: 1   MPAPASSTSVGSGSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMW 60

Query: 331 RFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 450
           RFYTDDS            MSLLFIASVFMLHIWGKY R+
Sbjct: 61  RFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100


>AJ249754-1|CAB56698.1|  100|Drosophila melanogaster sec61beta
           protein protein.
          Length = 100

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 49/100 (49%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
 Frame = +1

Query: 160 MPQSPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXG---SGGMW 330
           MP   S+TSVGSGSRSP+K SA     SG                      G   +GGMW
Sbjct: 1   MPAPASSTSVGSGSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMW 60

Query: 331 RFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 450
           RFYTDDS            MSLLFIASVFMLHIWGKY R+
Sbjct: 61  RFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100


>AE013599-1924|AAF58229.1|  100|Drosophila melanogaster CG10130-PA
           protein.
          Length = 100

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 49/100 (49%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
 Frame = +1

Query: 160 MPQSPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXG---SGGMW 330
           MP   S+TSVGSGSRSP+K SA     SG                      G   +GGMW
Sbjct: 1   MPAPASSTSVGSGSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMW 60

Query: 331 RFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 450
           RFYTDDS            MSLLFIASVFMLHIWGKY R+
Sbjct: 61  RFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100


>AY094906-1|AAM11259.1|  383|Drosophila melanogaster RH12404p
           protein.
          Length = 383

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 241 WLFVGQQKLLWVIYSQILQM*HSEIEAFLFKRCKTLL 131
           W+F  Q+  LW    + LQ+ HS++E+ + KR K LL
Sbjct: 118 WIF--QRTQLWRDLDEQLQVIHSQMESVIEKRAKELL 152


>AE014298-1745|AAF48135.2|  383|Drosophila melanogaster CG1488-PA,
           isoform A protein.
          Length = 383

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 241 WLFVGQQKLLWVIYSQILQM*HSEIEAFLFKRCKTLL 131
           W+F  Q+  LW    + LQ+ HS++E+ + KR K LL
Sbjct: 118 WIF--QRTQLWRDLDEQLQVIHSQMESVIEKRAKELL 152


>AE014298-1744|AAN09641.1|  483|Drosophila melanogaster CG1488-PB,
           isoform B protein.
          Length = 483

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 241 WLFVGQQKLLWVIYSQILQM*HSEIEAFLFKRCKTLL 131
           W+F  Q+  LW    + LQ+ HS++E+ + KR K LL
Sbjct: 218 WIF--QRTQLWRDLDEQLQVIHSQMESVIEKRAKELL 252


>AY118698-1|AAM50558.1|  570|Drosophila melanogaster AT19257p
           protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 163 PQSPSATSVGSGSRSPTKASAGPRTASG 246
           PQ+P    V SG+R PT  S+   TA+G
Sbjct: 109 PQTPCELKVPSGNRCPTDQSSNHDTATG 136


>AE014296-2960|AAN11700.1|  573|Drosophila melanogaster CG32181-PA
           protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 163 PQSPSATSVGSGSRSPTKASAGPRTASG 246
           PQ+P    V SG+R PT  S+   TA+G
Sbjct: 109 PQTPCELKVPSGNRCPTDQSSNHDTATG 136


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,356,036
Number of Sequences: 53049
Number of extensions: 418803
Number of successful extensions: 894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)