Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3b05
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1164 + 28104181-28104272,28104359-28104989                       28   5.3  
05_03_0454 - 14227447-14228040                                         28   5.3  
03_06_0199 + 32310272-32311432                                         28   5.3  
02_05_0031 - 25215587-25216145,25218108-25218133,25218262-252184...    28   5.3  
01_05_0490 + 22672241-22674679                                         27   7.0  

>06_03_1164 + 28104181-28104272,28104359-28104989
          Length = 240

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 76  NGWSRTWAPVHSASLLPVYCQR 141
           NGW R WA   S +++ V C R
Sbjct: 146 NGWRRVWAEGDSKAVVDVVCDR 167


>05_03_0454 - 14227447-14228040
          Length = 197

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 14  IFKRKSSSLIIVCEVNGNLLRMGGHGHGPP 103
           +F R    +I   E++G L R+G  G  PP
Sbjct: 48  MFDRDGDGVITPAELSGALCRLGARGEAPP 77


>03_06_0199 + 32310272-32311432
          Length = 386

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = -3

Query: 496 FNAIDSYKV*IKFYRQLNQSISNSILFQLQ*CKQFTTK---SMLSLVPVTMPMFTPSHKF 326
           FNAID  ++    Y Q    ++++ ++  +   + TTK   ++ SL PV +    P    
Sbjct: 273 FNAIDGNRI----YYQERDDLTSADIYMYELESEETTKIGGAIDSLNPVFLVSTEPPFSP 328

Query: 325 IQSHCDYCESQSNGKSSKEEFSGSLP 248
           IQ  C Y +     +   E+   SLP
Sbjct: 329 IQLFCSYADEALRFRLEWEKIVQSLP 354


>02_05_0031 -
           25215587-25216145,25218108-25218133,25218262-25218486,
           25219809-25220111
          Length = 370

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 76  NGWSRTWAPVHSASLLPVYCQR 141
           NGW R WA   S +++ V C R
Sbjct: 276 NGWRRVWAEGDSKTVVDVVCDR 297


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 98  PPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPG 235
           PP   P     +V+ +P+ +ELE  + V+ +K P   +    + PG
Sbjct: 466 PPPARPRRRSRSVESLPRTEELEAEIVVEEIKYPLPSSSPAMFPPG 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,094,473
Number of Sequences: 37544
Number of extensions: 300653
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)