Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3a23
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 32 0.075
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 30 0.30
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 29 0.70
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 27 3.7
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 26 6.5
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 26 6.5
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 26 6.5
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 26 6.5
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 6.5
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 6.5
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 8.6
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.6
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 32.3 bits (70), Expect = 0.075
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +1
Query: 277 GFPPGVAEELVIKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEAS 456
GF G E + ++ PK K LN + + ++ SE+ S D + S
Sbjct: 191 GFSTGTNESEITPNIKVLPPKKKKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNS 250
Query: 457 GEQDVLTSEHQVREAVSSQPEE 522
E++ T+E ++A + PE+
Sbjct: 251 SEENKDTNEPSTKDAEKTVPED 272
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 30.3 bits (65), Expect = 0.30
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 349 EPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLE-ASGEQDVLTSEHQVREAVSSQPEEY 525
EP+K + VA+E+E +++T A E A +D +S + + SQ +
Sbjct: 79 EPNKESGAFGSYKNDDVAKEIESSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKSA 138
Query: 526 KPPVIP 543
PP +P
Sbjct: 139 LPPNVP 144
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 29.1 bits (62), Expect = 0.70
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 577 DRENYSWAQTLMDLDVTVKLPPDIKSSKDLKVAINPGDIYV 699
+ Y W QT+ D+D+ + +P + +K L+V ++ D+ +
Sbjct: 7 EEAEYEWDQTIADVDIVIHVPKGTR-AKSLQVDMSNHDLKI 46
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 92 GRIHKEYCKKCHPRTNLANTTIFYQIF*LMKNLSWVFYRQFL 217
G + K +C+ P N I +F L+ L+W FYR+ L
Sbjct: 260 GHLMKNHCRNSSPHDN----PILEYLFALVSLLAWPFYRRKL 297
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -2
Query: 191 IDFSLTKIFDK-ISSYWLNSF-ADDIFYSILYEFFHIRNILKD*FITKMKKDIKYFISNI 18
+DF + ++ + +S +W F F+SI+ F + IL+ + D++Y+I+N+
Sbjct: 1017 LDFPVLIVWARNLSMHWSIPFPTHHNFFSII-PFILLTEILRTGKMLPRLNDVEYYINNV 1075
Query: 17 CFFL 6
FL
Sbjct: 1076 FLFL 1079
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 651 FYIWWKFYSYIKIH*SLRPRVIFSVRSIVALASLL 547
F++ K Y ++ +LR IFS + VA+A +L
Sbjct: 171 FFVGCKIYDWVAGSKNLRASTIFSKETTVAIAPML 205
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 487 DVQMLGHLV-LHLPRGPPKYLH 425
D+++ HL L P GPPKY+H
Sbjct: 571 DLKVNTHLFRLDKPNGPPKYIH 592
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 78 IKGLVHYKDEKRHK 37
+KG++HYKD K+ K
Sbjct: 93 VKGVLHYKDNKKQK 106
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 483 TSSKGSSFESA*RVQASSNTNTEEKRVLQWSGQRKLL 593
TSS+ FE V ++S N +LQ S KLL
Sbjct: 140 TSSQRELFEQKSSVASASKDNVSSSSILQGSASSKLL 176
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +1
Query: 421 ASEDTSADLEASGEQDVLTSE-----HQVREAVSSQPEEYKPPVIP 543
++ AD+ S QD++ +E R +VSS P + PP +P
Sbjct: 234 SASSKGADVARSKVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVP 279
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 463 QDVLTSEHQVREAVSSQPEEYKPPVIPIQKRSECYNGADREN 588
QD+ T ++ ++E ++ +E V+ I + YNG+D N
Sbjct: 230 QDLRTLKNMIKEGNITEVDELYREVLRIFANCKMYNGSDPAN 271
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 386 MISLFKSVCLCGSFTFLGSHVRRTLITSSSATPGGKPM 273
MI++F V + GSF + + LIT++ GGKP+
Sbjct: 330 MIAMFTGVVIGGSFNIMWNQRYAKLITAN----GGKPL 363
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = -2
Query: 242 KSVRLAKKLKIADRKPKIDFSLTKIFDKISSYWLNSFADDIFY 114
KS+ + K + P I F+L ++ ++ W++ +D+ Y
Sbjct: 101 KSIEMHKHALLLQEAPDIWFNLAQVHLNLAEIWVDLDREDLAY 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,917
Number of Sequences: 5004
Number of extensions: 63839
Number of successful extensions: 185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -