Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3a23
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81546-7|CAB04452.1| 320|Caenorhabditis elegans Hypothetical pr... 39 0.004
AF164431-1|AAF82633.1| 320|Caenorhabditis elegans NUD-1 protein. 39 0.004
Z78018-1|CAB01445.1| 126|Caenorhabditis elegans Hypothetical pr... 29 3.5
U23484-14|AAC46763.1| 194|Caenorhabditis elegans Hypothetical p... 29 3.5
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 29 3.5
Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical pr... 29 4.6
U97016-10|AAP68963.1| 181|Caenorhabditis elegans Hypothetical p... 28 6.1
U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z92847-1|CAE46676.1| 208|Caenorhabditis elegans Hypothetical pr... 28 8.0
U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical pr... 28 8.0
>Z81546-7|CAB04452.1| 320|Caenorhabditis elegans Hypothetical
protein F53A2.4 protein.
Length = 320
Score = 38.7 bits (86), Expect = 0.004
Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 9/211 (4%)
Frame = +1
Query: 133 NEFSQYDDILSNILVN-EKSILGFLSAIFNFLARRTDFYYVPDGQYENIGFPPGVAEELV 309
+++ ++D +L ++ + L +F FL+R+TDFY G + ++
Sbjct: 2 SQYERFDSVLLSMAQQLSGGVPEMLDVLFEFLSRKTDFYSGA-GVDQARTLLLEKFDKHG 60
Query: 310 IKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIAS---EDTSADLEASGEQDVLTS 480
K ++ + ++ + L +E E + E T + A ++ S
Sbjct: 61 GKAMKEAEEAKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNS 120
Query: 481 EHQVREAVSSQPEEYKPPVIPIQK----RSECYNGADRENYSWAQTLMDLDVTVKLPPDI 648
+ + V ++ E K + + + NGAD Y W QTL +L+V + +
Sbjct: 121 VENLEKFVDNEGETSKDAEVEDEDSKLMKPNSGNGADLAKYQWTQTLQELEVKIPIAAGF 180
Query: 649 K-SSKDLKVAINPGDIYVCRQNGDVIVKDSL 738
S+D+ V I + V +N IV L
Sbjct: 181 AIKSRDVVVKIEKTSVSVGLKNQAPIVDGKL 211
>AF164431-1|AAF82633.1| 320|Caenorhabditis elegans NUD-1 protein.
Length = 320
Score = 38.7 bits (86), Expect = 0.004
Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 9/211 (4%)
Frame = +1
Query: 133 NEFSQYDDILSNILVN-EKSILGFLSAIFNFLARRTDFYYVPDGQYENIGFPPGVAEELV 309
+++ ++D +L ++ + L +F FL+R+TDFY G + ++
Sbjct: 2 SQYERFDSVLLSMAQQLSGGVPEMLDVLFEFLSRKTDFYSGA-GVDQARTLLLEKFDKHG 60
Query: 310 IKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIAS---EDTSADLEASGEQDVLTS 480
K ++ + ++ + L +E E + E T + A ++ S
Sbjct: 61 GKAMKEAEEAKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNS 120
Query: 481 EHQVREAVSSQPEEYKPPVIPIQK----RSECYNGADRENYSWAQTLMDLDVTVKLPPDI 648
+ + V ++ E K + + + NGAD Y W QTL +L+V + +
Sbjct: 121 VENLEKFVDNEGETSKDAEVEDEDSKLMKPNSGNGADLAKYQWTQTLQELEVKIPIAAGF 180
Query: 649 K-SSKDLKVAINPGDIYVCRQNGDVIVKDSL 738
S+D+ V I + V +N IV L
Sbjct: 181 AIKSRDVVVKIEKTSVSVGLKNQAPIVDGKL 211
>Z78018-1|CAB01445.1| 126|Caenorhabditis elegans Hypothetical
protein W07G4.1 protein.
Length = 126
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 48 FHLCNELIL*YISNVEEFIKNTVKNVIRERI*PIRRYFIKYF 173
F +C ++ + +E FIKN ++ I + + PI +YF F
Sbjct: 5 FRVCKNIVFLSLRILETFIKNILEISIFDELMPIFQYFYSIF 46
>U23484-14|AAC46763.1| 194|Caenorhabditis elegans Hypothetical
protein EEED8.3 protein.
Length = 194
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 325 TCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEASG 459
TC N + H HTDL + + T+ + + IA +D + A G
Sbjct: 103 TCYKMNGNQLHVHTDLLGKSLIPTIFEFDKPIARDDNAVSTHAEG 147
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 508 SQPEEYKPPVIPIQKRS 558
SQP Y+PPV P+Q RS
Sbjct: 273 SQPRSYQPPVDPVQDRS 289
>Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical
protein H12I19.2 protein.
Length = 324
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 492 YLMFRC*DILFSTCLEVRRSIFTSNYFDLLSNCRA 388
Y +F D +F CLE+ SI + +L NC A
Sbjct: 157 YALFIVKDFIFLLCLEIGNSIGSKRRVELAKNCYA 191
>U97016-10|AAP68963.1| 181|Caenorhabditis elegans Hypothetical
protein B0261.8 protein.
Length = 181
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/82 (20%), Positives = 40/82 (48%)
Frame = +1
Query: 310 IKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEASGEQDVLTSEHQ 489
+KV RTC+ ++ + ++ + +EI + E I +D ++ +Q++ S+ +
Sbjct: 39 VKVQRTCEVQDEEAEEENIEFEHEI-------DEEEIEEQDEIVHEQSENDQNLKDSDEK 91
Query: 490 VREAVSSQPEEYKPPVIPIQKR 555
E V+ + K +PI ++
Sbjct: 92 KNEIVALEKSTEKDEELPIPEK 113
>U64598-2|AAK39214.2| 558|Caenorhabditis elegans Hypothetical
protein C52B9.4 protein.
Length = 558
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 235 TDFYYVPDGQYENIGFPPGVAEELVIKVLRTCDPK 339
T+ + G+Y+ IG P V+++ TCDP+
Sbjct: 25 TEVVEIQQGKYQLIGVPQAALNGTVVQLEFTCDPE 59
>Z92847-1|CAE46676.1| 208|Caenorhabditis elegans Hypothetical
protein H01G02.3a protein.
Length = 208
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 356 CGSFTFLGSHVRRTLITSSSATPGGKPMFSYWP 258
C +F FL +H RRT SSS++ + P
Sbjct: 90 CNTFAFLRTHTRRTSQASSSSSSSSSSSAGFAP 122
>U00057-1|AAA50726.2| 347|Caenorhabditis elegans Hypothetical
protein T24G10.2 protein.
Length = 347
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +1
Query: 424 SEDTSADLEASGEQDVLTSEHQVREAVSSQPEEYKPPVIPIQKRSECYNGADRENYSWAQ 603
+++ +D G D S+H+ E + E+ K +P++ + E +D ++
Sbjct: 69 NDENGSDSSDDGGTDS-DSDHEEGEEKKEKTEKVKKEELPVKAKKEVKEDSDSDS-GVED 126
Query: 604 TLMD-----LDVTVKLPPDIKSS 657
+MD T ++PPD+ SS
Sbjct: 127 AVMDGKKRGKKTTTRIPPDMASS 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,665,087
Number of Sequences: 27780
Number of extensions: 359166
Number of successful extensions: 1054
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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