Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a23
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.75 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.75 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.75 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.0  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   5.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.3  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 531 SSNTNTEEKRVLQWS-GQRKLLVGANSNGS*CNCKTSTRYKIFKRPKSCY 677
           S N  T E  +L ++ G ++L+VG N   S     + TR++  K+  S Y
Sbjct: 55  SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 104


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 531 SSNTNTEEKRVLQWS-GQRKLLVGANSNGS*CNCKTSTRYKIFKRPKSCY 677
           S N  T E  +L ++ G ++L+VG N   S     + TR++  K+  S Y
Sbjct: 71  SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 531 SSNTNTEEKRVLQWS-GQRKLLVGANSNGS*CNCKTSTRYKIFKRPKSCY 677
           S N  T E  +L ++ G ++L+VG N   S     + TR++  K+  S Y
Sbjct: 128 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 177


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 481 EHQVREAVSSQPEEYKPPVIPIQKRSECYNGAD 579
           E    E      E+Y PP +P  ++S   NG +
Sbjct: 139 EDNDEEEAQKPKEQYIPPELPNDEKSLFENGVE 171


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 83  FECGRIHKEYCKKCHPRTNL 142
           FEC   HK + +  H +T++
Sbjct: 10  FECPECHKRFTRDHHLKTHM 29


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 203 RKPKIDFSLTKIFDKISSYWLNSFADDIFYSILY 102
           ++PKI  SL+   +  ++Y+ N+    ++Y+I Y
Sbjct: 299 KEPKIISSLSNSCNYSNNYYNNNNYKKLYYNINY 332


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 619 QDPLEFAPTSNFLCPLHCSTRFSSVLVLLEACTLQADSKLLPLLDVQMLG 470
           Q+P+   PT   L      T  +    +L   T+  DS+ L  LD Q  G
Sbjct: 715 QEPVTNRPTGQLLLDYLTDTVLAYKPKILGKPTISPDSRHLVTLDKQETG 764


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,946
Number of Sequences: 438
Number of extensions: 4727
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)