Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a18
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    32   0.099
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    31   0.17 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    30   0.40 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   3.7  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    27   3.7  
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    26   4.9  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   6.5  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   8.6  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 31.9 bits (69), Expect = 0.099
 Identities = 20/71 (28%), Positives = 25/71 (35%)
 Frame = +3

Query: 165 QPGDTVRAPHPGRHVPGAHAPHPGQSAPRRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGD 344
           +PG+ +  P P  H PG H P P    P   E  +       H   G H   P +     
Sbjct: 202 EPGEHMPPP-PMHHKPGEHMPPP----PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 256

Query: 345 VRRAEPPQQHE 377
                PP  HE
Sbjct: 257 EHMPPPPMHHE 267



 Score = 31.9 bits (69), Expect = 0.099
 Identities = 20/71 (28%), Positives = 25/71 (35%)
 Frame = +3

Query: 165 QPGDTVRAPHPGRHVPGAHAPHPGQSAPRRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGD 344
           +PG+ +  P P  H PG H P P    P   E  +       H   G H   P +     
Sbjct: 254 EPGEHMPPP-PMHHEPGEHMPPP----PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 308

Query: 345 VRRAEPPQQHE 377
                PP  HE
Sbjct: 309 EHMPPPPMHHE 319



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/61 (26%), Positives = 19/61 (31%)
 Frame = +3

Query: 195 PGRHVPGAHAPHPGQSAPRRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGDVRRAEPPQQH 374
           P  H PG H P P    P   +  +       H   G H   P +          PP  H
Sbjct: 198 PAHHEPGEHMPPP----PMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 253

Query: 375 E 377
           E
Sbjct: 254 E 254


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -3

Query: 528 ALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPAHVAEVVP 355
           ALV+ P RELA  H + +H E  + + + R+  +  G+     +RLL    HV    P
Sbjct: 195 ALVVAPTRELA--HQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 25/98 (25%), Positives = 45/98 (45%)
 Frame = -1

Query: 587 APSNPMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSASKVSPLACSG 408
           +PS+    T+TSPS+         S   +S   +  S++  +  S S+S+S  S  + S 
Sbjct: 143 SPSSSSTTTTTSPSSSSSS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197

Query: 407 IPPAVSSAPQLMLLRWFRTTHISTKRKLRCSAMSSRGS 294
              + SS+  + +     ++H S+      S+ SSR S
Sbjct: 198 SSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -3

Query: 555 VPVHREVRDALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPA 376
           +P  +E ++A + Q  ++  +    QR ++       Q++    +G+  HPA R    PA
Sbjct: 112 IPFQQE-KEAAMQQQQQQQQQQQLYQRQMQSREALLSQQIPPNQIGINAHPAVRQTPQPA 170


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 125 VSNVWACLAVLYYGSKSPNNLLTGV 51
           V + W C   +Y+   SP  L TG+
Sbjct: 158 VESAWRCAEAIYFPPSSPYTLSTGI 182


>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 427 ETFEALVLCEPRALKVALNGVHFCEFPHRLQYQRISHLTVD 549
           ETF++ V+C+P AL V  +  H     HRL  +  +H +++
Sbjct: 72  ETFDSKVVCDPVALTVLADASH-----HRLFRRLKTHWSIE 107


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 549 VHREVR-DALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVG 418
           VHR+++ + L+ QP+  L   +     LE  +L +   LEG+  G
Sbjct: 185 VHRDIKPENLLFQPIEYLPSQNYTPPSLEPNKLDEGMFLEGIGAG 229


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -1

Query: 569 NCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSASKVSPLACSGIPPAVS 390
           + +STS ST         S   +S   TP S+++ +  S S S+S  S  A S    ++S
Sbjct: 138 SASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSS--GSIS 195

Query: 389 SA 384
           SA
Sbjct: 196 SA 197


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 569 NCTSTSPSTVRCEMRWYCSRCGNSQK-CT 486
           +C       V+C+ ++ CSRC  S++ CT
Sbjct: 17  SCLRCRRRKVKCDRQYPCSRCKESEESCT 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,445
Number of Sequences: 5004
Number of extensions: 48093
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)