Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a13
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013...    28   6.9  

>10_08_0392 +
           17500748-17500877,17501006-17501280,17501321-17501388,
           17501516-17501632,17501802-17501943,17502622-17502912,
           17503507-17503650
          Length = 388

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = -1

Query: 349 FILSKCNLSICKQFRCFLIFDKASVIHFSSANN*VSSAIRLFN--LTADIFNIETLKNII 176
           FI+  C++++C  F  FL+    S + +    +  +  I  F   L  D F    +  I+
Sbjct: 246 FIVLSCSIAVCVNFSTFLVIGTTSPVTYQVLGHLKTCLILSFGYVLLRDPFTFRNVAGIL 305

Query: 175 *FCYYQNYHNYYRILRKR 122
              +    ++++ +   R
Sbjct: 306 VAIFGMGLYSFFSVSESR 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,780
Number of Sequences: 37544
Number of extensions: 239725
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)