Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a13
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   2.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.1  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.4  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 163 YQNYHNYYRILRKRYPQNSVQLLMQI 86
           Y NY+NY    +K Y +N +  + QI
Sbjct: 91  YSNYNNYNNYNKKLYYKNYIINIEQI 116



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 199 IETLKNII*FCYYQNYHNY-YRILRKRYPQNSVQL 98
           I +L N   +  Y NY+NY  ++  K Y  N  Q+
Sbjct: 82  ISSLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQI 116


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 166 YYQNYHNYYRILRKRYPQNSVQL 98
           Y  NY+N Y+ L K Y  N  Q+
Sbjct: 105 YNNNYNNNYKKLYKNYIINIEQI 127


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 166 YYQNYHNYYRILRKRYPQNSVQL 98
           Y  NY+N Y+ L K Y  N  Q+
Sbjct: 105 YNNNYNNNYKKLYKNYIINIEQI 127


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 379 CADFLSFNCDFILSKCNLSIC 317
           C+ F++FN D    K NL +C
Sbjct: 419 CSGFVAFNGDQYDLKKNLKVC 439


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 139 CSNCDNSDSSRIRLYFLTFQC*KCRQSS 222
           C +C N    +IR +    QC  CRQ +
Sbjct: 606 CWHCFNCTQYQIRDHKDVTQCISCRQGT 633


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 199 IETLKNII*FCYYQNYHNYYRILRKRYPQN 110
           I +L N   +  Y NY+N Y    K+   N
Sbjct: 82  ISSLSNNYNYSNYNNYNNNYNNYNKKLYYN 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,916
Number of Sequences: 438
Number of extensions: 3024
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)