Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a12
         (820 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   2.8  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   6.5  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   8.6  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = -2

Query: 819 EKGHQTRRQQEYVPRMKHEIARIYRDGIL-IVEQGPGEERQRGAGERVEQAAQQDHARAQ 643
           E+ H+  R +E     +   A I R+    + EQ   E+R++   E+ EQ  +++  R Q
Sbjct: 444 EEEHRAARLREEERAREAREAAIEREKERELREQREREQREKEQREK-EQREKEERERQQ 502

Query: 642 LRAVQL-RDVRDQNRERPVEQKATGEPHD*ERGEVLAH 532
               Q  R+ R++ RER   ++   E       E + H
Sbjct: 503 REKEQREREQREKEREREAARERERERERERERERMMH 540


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 protein.
          Length = 961

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 17/81 (20%), Positives = 34/81 (41%)
 Frame = -2

Query: 810  HQTRRQQEYVPRMKHEIARIYRDGILIVEQGPGEERQRGAGERVEQAAQQDHARAQLRAV 631
            H      +Y P     +A  YR      +Q   +++Q+   E+ +Q       + +L A 
Sbjct: 878  HSMHTDCDYEPESHKLLAENYRQQHQQQQQQQQQQQQQHEHEQQQQQNSMLATQQRLEAS 937

Query: 630  QLRDVRDQNRERPVEQKATGE 568
            Q+    DQ  ++P+++    E
Sbjct: 938  QM----DQGTDQPMQESPCNE 954


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 90  RASTATGRAGRSETVMRLAAP 28
           RAS A   A  SE+VMR AAP
Sbjct: 772 RASKAKLLASVSESVMRYAAP 792


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,012
Number of Sequences: 2352
Number of extensions: 12642
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86902827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)