Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3a11
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0091 + 19651828-19652086,19652199-19652269,19652404-196525... 29 3.2
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 29 4.3
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 29 5.6
03_02_0992 + 13049871-13050449 29 5.6
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545... 29 5.6
02_05_0814 - 31970558-31971126,31971242-31971413 29 5.6
11_06_0726 - 26707605-26708036 28 7.4
10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247 28 7.4
06_03_1310 + 29238644-29240260 28 7.4
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362... 28 7.4
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 28 9.8
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 28 9.8
07_03_1107 - 24024387-24024497,24025799-24026410 28 9.8
>02_04_0091 +
19651828-19652086,19652199-19652269,19652404-19652505,
19652626-19652730,19652865-19653000,19654178-19654287,
19654381-19654461
Length = 287
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -2
Query: 401 RPPLRLSARGHRPARG 354
RPPL ARG RPARG
Sbjct: 10 RPPLAAGARGRRPARG 25
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 411 PEAPTTTPLVCEGSPAGEGGNSTGP 337
P AP T V +GSP G G + GP
Sbjct: 110 PRAPATAETVPQGSPRGPGVRTVGP 134
>10_08_0765 - 20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = -2
Query: 398 PPLRLSARGHRPARGETAPDLKFQDSPSDLWQRPKGS*SYHQNYCRSLQSLRSRTGLR*A 219
PP + G+RP+RG F++ P+ + + SYH+ C + Q+ R +
Sbjct: 985 PPNQYWHNGNRPSRGSYGYLEVFREHPNHHSGQDSRTRSYHETMCSTPQTGNGRFPYSGS 1044
Query: 218 LHRRTIQERFS 186
+ R Q + S
Sbjct: 1045 IQREKSQRQTS 1055
>03_02_0992 + 13049871-13050449
Length = 192
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 423 TNPYPEAPTTTPLVCEGSPAGEGGNS 346
T+P A T TPL GS +GEGG+S
Sbjct: 99 TSPPLHAATVTPLRPAGSRSGEGGSS 124
>03_02_0076 -
5451137-5452503,5453439-5453866,5453949-5454046,
5454723-5454836,5455017-5455111,5455222-5455283,
5455398-5455557,5456247-5456643
Length = 906
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -1
Query: 435 EPGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGPEISGF 322
+P P P TT L SP+ G G E GF
Sbjct: 48 KPAAPKPSPPPTLTTALRSSASPSASGAGRVGGEADGF 85
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Frame = -1
Query: 441 PWEPGGTNPYPEAP---TTTPLVCEGSPAGEGGNSTGP 337
P P T PYP P TTP SPA GG P
Sbjct: 167 PSTPMPTTPYPSTPMTTPTTPYTTPTSPACSGGAGATP 204
>11_06_0726 - 26707605-26708036
Length = 143
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 429 PAPKVKPTDDEWPSQIVVRTNLSTRAVTV 515
P P ++P D +WP+Q V R + R V +
Sbjct: 93 PLPSLQPHDFQWPAQAVEREEEARRRVVL 121
>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
Length = 722
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = +1
Query: 25 RKHPPATQHIPEWAVFQIGVSQLAHPPLGHSACAPQVKLC 144
RKHP + ++A+ + PPL + AC C
Sbjct: 260 RKHPRGVPFVLDFAIANVSCPAQGQPPLDNYACRSSNSFC 299
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -1
Query: 432 PGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGPEISGFALGS 310
PG P P P++ P P G GG P + G A S
Sbjct: 467 PGHHAPVPGTPSSPPSSSWSPPQGGGGKLPFPPVHGVAYSS 507
>04_01_0272 +
3624910-3625247,3625286-3625853,3625920-3626895,
3627053-3627087
Length = 638
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 34 PPATQHIPEWAVFQIGVSQLAHPPL 108
PP Q +P WA F V Q PP+
Sbjct: 71 PPEHQLVPFWAPFYTSVDQTTSPPI 95
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 441 PWEPGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGPEISGFALGS 310
P+ P P P TTP G AG+GG G +G A S
Sbjct: 67 PFLPDSAPPQLPPPVTTPAPAGG--AGDGGTDAGAAATGDASSS 108
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 314 PRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQGKAYG 454
P P +GP + P T+ GA GY PPG QG G
Sbjct: 272 PPPPPPNAGPPNYQPHAPNPQGYTNYQQGGAPGYQGGPPGYQGSNQG 318
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 302 AARDPRANPEISGPVLFPPSPAGDPSQT 385
A P ++P + PV PPSPA + T
Sbjct: 104 ATPPPASSPPVEAPVASPPSPAAEAPAT 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,215,575
Number of Sequences: 37544
Number of extensions: 481058
Number of successful extensions: 1637
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -