Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3a11
(795 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC142684-1|AAI42685.1| 907|Homo sapiens deafness, autosomal rec... 32 2.7
BC142614-1|AAI42615.1| 907|Homo sapiens deafness, autosomal rec... 32 2.7
AL138895-3|CAI17246.1| 907|Homo sapiens deafness, autosomal rec... 32 2.7
AL138895-2|CAI17245.1| 524|Homo sapiens deafness, autosomal rec... 32 2.7
AL138895-1|CAI17244.1| 556|Homo sapiens deafness, autosomal rec... 32 2.7
AK022854-1|BAB14275.1| 556|Homo sapiens protein ( Homo sapiens ... 32 2.7
AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin receptor-i... 32 2.7
AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor i... 32 2.7
AB040959-1|BAA96050.1| 963|Homo sapiens KIAA1526 protein protein. 32 2.7
U77396-1|AAB36550.1| 228|Homo sapiens LPS-Induced TNF-Alpha Fac... 31 4.8
BX537543-1|CAD97778.1| 161|Homo sapiens hypothetical protein pr... 31 4.8
BC101969-1|AAI01970.1| 161|Homo sapiens LPS-induced TNF-alpha f... 31 4.8
BC101402-1|AAI01403.1| 161|Homo sapiens lipopolysaccharide-indu... 31 4.8
BC101401-1|AAI01402.1| 161|Homo sapiens LPS-induced TNF-alpha f... 31 4.8
BC096066-1|AAH96066.1| 161|Homo sapiens lipopolysaccharide-indu... 31 4.8
BC096065-1|AAH96065.1| 161|Homo sapiens lipopolysaccharide-indu... 31 4.8
BC096063-1|AAH96063.1| 161|Homo sapiens lipopolysaccharide-indu... 31 4.8
BC046154-1|AAH46154.1| 161|Homo sapiens lipopolysaccharide-indu... 31 4.8
BC039840-1|AAH39840.1| 161|Homo sapiens lipopolysaccharide-indu... 31 4.8
BC016491-1|AAH16491.1| 161|Homo sapiens lipopolysaccharide-indu... 31 4.8
BC008309-1|AAH08309.1| 161|Homo sapiens lipopolysaccharide-indu... 31 4.8
BC000053-1|AAH00053.1| 161|Homo sapiens LITAF protein protein. 31 4.8
AF010312-1|AAC39530.1| 228|Homo sapiens Pig7 protein. 31 4.8
AB034747-1|BAB32547.1| 161|Homo sapiens small integral membrane... 31 4.8
BC053367-1|AAH53367.1| 240|Homo sapiens GATS protein protein. 31 6.3
BC033723-1|AAH33723.1| 243|Homo sapiens GATS protein protein. 31 6.3
AK123191-1|BAC85553.1| 221|Homo sapiens protein ( Homo sapiens ... 31 6.3
>BC142684-1|AAI42685.1| 907|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 907
Score = 31.9 bits (69), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 308 RDPRANPEISGPVLFPPSPAGDPSQT 385
+ P A ++G L PPSP+G P QT
Sbjct: 690 KSPSAEATVAGGCLLPPSPSGHPDQT 715
>BC142614-1|AAI42615.1| 907|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 907
Score = 31.9 bits (69), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 308 RDPRANPEISGPVLFPPSPAGDPSQT 385
+ P A ++G L PPSP+G P QT
Sbjct: 690 KSPSAEATVAGGCLLPPSPSGHPDQT 715
>AL138895-3|CAI17246.1| 907|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 907
Score = 31.9 bits (69), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 308 RDPRANPEISGPVLFPPSPAGDPSQT 385
+ P A ++G L PPSP+G P QT
Sbjct: 690 KSPSAEATVAGGCLLPPSPSGHPDQT 715
>AL138895-2|CAI17245.1| 524|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 524
Score = 31.9 bits (69), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 308 RDPRANPEISGPVLFPPSPAGDPSQT 385
+ P A ++G L PPSP+G P QT
Sbjct: 307 KSPSAEATVAGGCLLPPSPSGHPDQT 332
>AL138895-1|CAI17244.1| 556|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 556
Score = 31.9 bits (69), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 308 RDPRANPEISGPVLFPPSPAGDPSQT 385
+ P A ++G L PPSP+G P QT
Sbjct: 339 KSPSAEATVAGGCLLPPSPSGHPDQT 364
>AK022854-1|BAB14275.1| 556|Homo sapiens protein ( Homo sapiens
cDNA FLJ12792 fis, clone NT2RP2002032. ).
Length = 556
Score = 31.9 bits (69), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 308 RDPRANPEISGPVLFPPSPAGDPSQT 385
+ P A ++G L PPSP+G P QT
Sbjct: 339 KSPSAEATVAGGCLLPPSPSGHPDQT 364
>AF226728-1|AAF35887.1| 1548|Homo sapiens somatostatin
receptor-interacting protein splice variant b protein.
Length = 1548
Score = 31.9 bits (69), Expect = 2.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 438 WEPGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGPEI 331
W GG +P P AP+ + GS G GG+S GP +
Sbjct: 437 WRGGGPSPTPGAPSPSH---HGSAGGGGGSSQGPAL 469
>AF163302-1|AAD45121.1| 2161|Homo sapiens somatostatin receptor
interacting protein splice variant a protein.
Length = 2161
Score = 31.9 bits (69), Expect = 2.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 438 WEPGGTNPYPEAPTTTPLVCEGSPAGEGGNSTGPEI 331
W GG +P P AP+ + GS G GG+S GP +
Sbjct: 1050 WRGGGPSPTPGAPSPSH---HGSAGGGGGSSQGPAL 1082
>AB040959-1|BAA96050.1| 963|Homo sapiens KIAA1526 protein protein.
Length = 963
Score = 31.9 bits (69), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 308 RDPRANPEISGPVLFPPSPAGDPSQT 385
+ P A ++G L PPSP+G P QT
Sbjct: 746 KSPSAEATVAGGCLLPPSPSGHPDQT 771
>U77396-1|AAB36550.1| 228|Homo sapiens LPS-Induced TNF-Alpha Factor
protein.
Length = 228
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BX537543-1|CAD97778.1| 161|Homo sapiens hypothetical protein
protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC101969-1|AAI01970.1| 161|Homo sapiens LPS-induced TNF-alpha
factor protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC101402-1|AAI01403.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC101401-1|AAI01402.1| 161|Homo sapiens LPS-induced TNF-alpha
factor protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC096066-1|AAH96066.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC096065-1|AAH96065.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC096063-1|AAH96063.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC046154-1|AAH46154.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC039840-1|AAH39840.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC016491-1|AAH16491.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC008309-1|AAH08309.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC000053-1|AAH00053.1| 161|Homo sapiens LITAF protein protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>AF010312-1|AAC39530.1| 228|Homo sapiens Pig7 protein.
Length = 228
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>AB034747-1|BAB32547.1| 161|Homo sapiens small integral membrane
protein of lysosome/late endosome protein.
Length = 161
Score = 31.1 bits (67), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 296 SAAARDPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 430
SA + P ++ +P PA P T+G+V G G G PP
Sbjct: 15 SAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPP 59
>BC053367-1|AAH53367.1| 240|Homo sapiens GATS protein protein.
Length = 240
Score = 30.7 bits (66), Expect = 6.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 314 PRANPEISGPVLFPPSPAGDPSQTSG 391
PR +P + P PPS G PSQ G
Sbjct: 7 PRRHPRAAAPPALPPSTRGSPSQLGG 32
>BC033723-1|AAH33723.1| 243|Homo sapiens GATS protein protein.
Length = 243
Score = 30.7 bits (66), Expect = 6.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 314 PRANPEISGPVLFPPSPAGDPSQTSG 391
PR +P + P PPS G PSQ G
Sbjct: 10 PRRHPRAAAPPALPPSTRGSPSQLGG 35
>AK123191-1|BAC85553.1| 221|Homo sapiens protein ( Homo sapiens
cDNA FLJ41197 fis, clone BRACE2045947. ).
Length = 221
Score = 30.7 bits (66), Expect = 6.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 311 DPRANPEISGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQG 442
+PR + S P PP PAG +++G PPG +G
Sbjct: 133 EPRRSSTPSRPSSTPPRPAGQGQALPQILIGREALLTFPPGGRG 176
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,828,883
Number of Sequences: 237096
Number of extensions: 2555231
Number of successful extensions: 11994
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 11003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11942
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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