Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a11
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical ...    32   0.41 
Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical pr...    31   0.95 
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    31   1.3  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    30   2.2  
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    28   6.7  
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    28   8.9  

>AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical
           protein C16A11.3 protein.
          Length = 726

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = -2

Query: 629 ELQQKY*LIQRANKKINTNIAILV*QEIITIFVLRRTVHCYSTCREISSNYNL 471
           +LQQK   ++  +KKI  N+   V Q  I+   LR+TV   + C E+S N NL
Sbjct: 266 DLQQKIQGLEAMDKKIQYNVLSRVFQATIS---LRKTVQKLTKCGEMSKNGNL 315


>Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical
           protein R11H6.3 protein.
          Length = 387

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 97  HPPLG-HSACAPQVKLCQCPST*NTQHEFIRENRSCIVRLC 216
           +PPL   S  AP +KL    S  N +HE IR  ++   RLC
Sbjct: 110 NPPLRKRSGSAPSIKLITLASIWNLKHEHIRALKTTWARLC 150


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 353 PPSPAGDPSQTSGVVVGASGYGFVPPGSQG 442
           PP PAG P           GYG  PPG  G
Sbjct: 257 PPGPAGPPGPPGNNGAPGGGYGVGPPGPPG 286


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 157 T*NTQHEFIRENRSCIVRLCSAYLSP 234
           T N  ++FIR N+SC+ R CS   SP
Sbjct: 674 TGNNMNDFIRFNKSCVPRQCSHIGSP 699


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 583 IFLFAR*IS*YFCCNSV*IFRNRFVCLIISSTLLVYST 696
           IFL A   S YFCC  V + R +   L I   L++ ST
Sbjct: 113 IFLIANLPSLYFCCMDVFLCRKKSTWLFIGILLILRST 150


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 34  PPATQHIPEWAVFQIGVSQLAHPPLGHSACAPQVKLCQCPST*NTQHEFIRENRS 198
           PP   H P +   +I  SQ  HPP  H     + +     +   TQ+ F + N S
Sbjct: 72  PPKPLHQPSYLPLEISTSQHHHPPHHHPTQFQRGQSLALSNPIPTQNAFWQHNNS 126


>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical protein
            F22E10.3 protein.
          Length = 1327

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 306  PEIRGRILKFQVRCCFPPRRPVTPRRQAEWWSVL 407
            PEIRG IL   V+  + P+RP+ P  +   W+ L
Sbjct: 1080 PEIRGNILFENVKFSY-PQRPLQPIMKGLQWTAL 1112


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
            related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 306  PEIRGRILKFQVRCCFPPRRPVTPRRQAEWWSVL 407
            PEIRG IL   V+  + P+RP+ P  +   W+ L
Sbjct: 1080 PEIRGNILFENVKFSY-PQRPLQPIMKGLQWTAL 1112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,533,756
Number of Sequences: 27780
Number of extensions: 385496
Number of successful extensions: 1239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)