Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3a10
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 27 0.71
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 27 0.94
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 27 0.94
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 1.6
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 2.9
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 25 3.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 5.0
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.0
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr... 24 6.7
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 24 6.7
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.7
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 24 8.8
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 0.71
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 301 NKNTYLSPPNKMLRHRNYPKNVRGPLTPASKLVLHPS 191
NK ++PP L+H + V GP T A PS
Sbjct: 34 NKTVTITPPKHGLKHSRHKNRVNGPRTFAFDECFAPS 70
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 27.1 bits (57), Expect = 0.94
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 155 KHNYRLPLRVNLLFITINTIPLLVVRHVTSV 63
++N RLP N ++ TI +L V HVT V
Sbjct: 107 RNNERLPYLCNAIWSFYTTIVILAVLHVTHV 137
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 27.1 bits (57), Expect = 0.94
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 249 IPKMYEVL*HPQVNLYYILPATRQYFCKPHHEAQLSSP 136
+ K++ VL HP +N L +YF K H+ P
Sbjct: 210 VTKVFNVLDHPDINDSTCLTKEARYFVKEQHKKLSRKP 247
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 1.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 203 ITSFPQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRH 75
I +FPQ NI +H TK N L V F +T L V+H
Sbjct: 1029 INTFPQLFNILTTHATKDN----LTVKDCFPKDDTQQLAAVKH 1067
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 2.9
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 157 RSTTIVSLYE*ICYLLLSILFHY 89
R T+++SL +CYL+ +L+H+
Sbjct: 163 RHTSVISLIA-LCYLVFIVLYHF 184
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 3.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 122 LLFITINTIPLLVVRHVTSVVIIYLSKY 39
LL + INT PL + +I+++KY
Sbjct: 48 LLHVRINTSPLFIKTTTRPTALIHITKY 75
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 154 STTIVSLYE*ICYLLLSILFHYSLF 80
ST + LYE YL++ FHYS+F
Sbjct: 590 STPMSKLYE--DYLVMLFAFHYSMF 612
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 24.6 bits (51), Expect = 5.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 160 PRSTTIVSLYE*ICYLLLSILFHYSLFVT*HQL**YIC--PSIYVLSALR 17
P +I Y+ ICY +IL Y LF+ + IC P + + +R
Sbjct: 39 PNIYSIPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPHFFPIKRIR 88
>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 458
Score = 24.2 bits (50), Expect = 6.7
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -1
Query: 372 FFFYFISYNVQIYMSLLLDLTSKSIKTHIYHRQIKC 265
FF S+ V M LLDL SI+T KC
Sbjct: 316 FFKIASSFRVSYLMGCLLDLFVPSIRTGALKAMKKC 351
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 96 SITRCSSRNISCNNIFVQVFTCCLH*GRNC 7
S ++CS R +C I+ TCC+ G +C
Sbjct: 22 SASQCSPRYGTCGGIYYDGPTCCVV-GSSC 50
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 24.2 bits (50), Expect = 6.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +2
Query: 128 LVKGDDSCASWCGLQKYCL 184
+V D C WC ++CL
Sbjct: 510 VVNAPDLCGEWCDWYRHCL 528
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 289 YLSPPNKMLRHRNYPKNVRGPLTPASKLVLHP 194
Y + +K L H + P +++ TP+ VL P
Sbjct: 659 YHTSLSKSLEHSSTPASLQATKTPSPSFVLEP 690
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,742
Number of Sequences: 5004
Number of extensions: 33143
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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