Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3a10
(372 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87444-1|BAA13385.2| 692|Homo sapiens KIAA0255 protein. 29 3.6
BC022850-1|AAH22850.1| 625|Homo sapiens transmembrane 9 superfa... 29 3.6
BC021107-1|AAH21107.1| 625|Homo sapiens transmembrane 9 superfa... 29 3.6
AL049539-3|CAB75607.2| 625|Homo sapiens transmembrane 9 superfa... 29 3.6
AK126534-1|BAC86581.1| 528|Homo sapiens protein ( Homo sapiens ... 29 3.6
AB020807-1|BAA78631.1| 796|Homo sapiens TLR6 protein. 29 4.8
BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein comple... 28 8.4
AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop ... 28 8.4
AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein. 28 8.4
>D87444-1|BAA13385.2| 692|Homo sapiens KIAA0255 protein.
Length = 692
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +1
Query: 154 FVVWLTKILSCCGKDVIQVYLRV-LKDLVHFWDNY---DGAAFYLAVINMCFY 300
F+V++ ++SC ++ VY ++ +D +W N+ G+AFY+ V + ++
Sbjct: 588 FLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYF 640
>BC022850-1|AAH22850.1| 625|Homo sapiens transmembrane 9
superfamily protein member 4 protein.
Length = 625
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +1
Query: 154 FVVWLTKILSCCGKDVIQVYLRV-LKDLVHFWDNY---DGAAFYLAVINMCFY 300
F+V++ ++SC ++ VY ++ +D +W N+ G+AFY+ V + ++
Sbjct: 521 FLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYF 573
>BC021107-1|AAH21107.1| 625|Homo sapiens transmembrane 9
superfamily protein member 4 protein.
Length = 625
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +1
Query: 154 FVVWLTKILSCCGKDVIQVYLRV-LKDLVHFWDNY---DGAAFYLAVINMCFY 300
F+V++ ++SC ++ VY ++ +D +W N+ G+AFY+ V + ++
Sbjct: 521 FLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYF 573
>AL049539-3|CAB75607.2| 625|Homo sapiens transmembrane 9
superfamily protein member 4 protein.
Length = 625
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +1
Query: 154 FVVWLTKILSCCGKDVIQVYLRV-LKDLVHFWDNY---DGAAFYLAVINMCFY 300
F+V++ ++SC ++ VY ++ +D +W N+ G+AFY+ V + ++
Sbjct: 521 FLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYF 573
>AK126534-1|BAC86581.1| 528|Homo sapiens protein ( Homo sapiens
cDNA FLJ44570 fis, clone UTERU3011063, highly similar
to Transmembrane 9 superfamily protein member 4. ).
Length = 528
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +1
Query: 154 FVVWLTKILSCCGKDVIQVYLRV-LKDLVHFWDNY---DGAAFYLAVINMCFY 300
F+V++ ++SC ++ VY ++ +D +W N+ G+AFY+ V + ++
Sbjct: 424 FLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYF 476
>AB020807-1|BAA78631.1| 796|Homo sapiens TLR6 protein.
Length = 796
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 152 HNYRLPLRVNLLFITINTIPLLVVRHVTSVVI-IYLSKYLRVVC 24
H L + LL +TI L++ VTS+ I + L YLR+VC
Sbjct: 576 HMSELSCNITLLIVTIGATMLVLAVTVTSLCIYLDLPWYLRMVC 619
>BC066650-1|AAH66650.1| 874|Homo sapiens coatomer protein complex,
subunit gamma protein.
Length = 874
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 142 R*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVHFWDNYDGAA 267
R +C++ K +SC +DVI V + KD+ DNY G A
Sbjct: 85 RRMCYLT--IKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPA 124
>AF100756-1|AAD43020.1| 874|Homo sapiens coat protein gamma-cop
protein.
Length = 874
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 142 R*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVHFWDNYDGAA 267
R +C++ K +SC +DVI V + KD+ DNY G A
Sbjct: 85 RRMCYLT--IKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPA 124
>AB047846-1|BAB17657.1| 874|Homo sapiens gamma1-COP protein.
Length = 874
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 142 R*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVHFWDNYDGAA 267
R +C++ K +SC +DVI V + KD+ DNY G A
Sbjct: 85 RRMCYLT--IKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPA 124
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,172,318
Number of Sequences: 237096
Number of extensions: 1072137
Number of successful extensions: 2081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2421480012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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