Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a10
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21310-5|AAY86191.1|  148|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    28   2.4  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    28   2.4  
L23648-11|AAA28027.2|  244|Caenorhabditis elegans Hypothetical p...    28   2.4  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      28   2.4  
Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    27   3.2  
U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AC199169-14|ABO33249.1|  389|Caenorhabditis elegans Hypothetical...    26   7.5  
AC024882-14|AAF60927.1|  360|Caenorhabditis elegans Hypothetical...    26   7.5  
Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical p...    26   9.9  
U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.        26   9.9  
U40412-4|AAV28342.1|  618|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>U21310-5|AAY86191.1|  148|Caenorhabditis elegans Hypothetical
           protein F40H6.6 protein.
          Length = 148

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 372 FFFYFISYNVQIYMSLLLDLTSKSIKTH 289
           F FYFI Y ++IYM+  L L ++  K +
Sbjct: 119 FKFYFIFYKIKIYMNYQLLLMNRKFKIY 146


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 133  KGRR*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVH 240
            K R+ +  ++WL+K L+ CG    +V  RV+K  +H
Sbjct: 3318 KARKPIAKILWLSKHLNACGSH--EVMNRVIKKQLH 3351


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 133  KGRR*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVH 240
            K R+ +  ++WL+K L+ CG    +V  RV+K  +H
Sbjct: 3329 KARKPIAKILWLSKHLNACGSH--EVMNRVIKKQLH 3362


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 133  KGRR*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVH 240
            K R+ +  ++WL+K L+ CG    +V  RV+K  +H
Sbjct: 3329 KARKPIAKILWLSKHLNACGSH--EVMNRVIKKQLH 3362


>L23648-11|AAA28027.2|  244|Caenorhabditis elegans Hypothetical
           protein F44B9.9 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 148 LCFVVWLTKILSCCGKDVIQVYLRVLKDLVHFWDNYDGAA 267
           +C V  L  + SCC ++VI + L        FW+++D  A
Sbjct: 89  ICLVFSLKSLFSCCFENVIDIILART-----FWEDFDAPA 123


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 133  KGRR*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVH 240
            K R+ +  ++WL+K L+ CG    +V  RV+K  +H
Sbjct: 3329 KARKPIAKILWLSKHLNACGSH--EVMNRVIKKQLH 3362


>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 197 SFPQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRH 75
           ++PQ   +  S ++K      LR+N +FITIN + +L + H
Sbjct: 173 NYPQMSAMATSPSSK------LRINYIFITINVLNVLTLMH 207


>U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical
           protein C01C4.2 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = -3

Query: 319 RFNVKVNKNTYLSPPNKMLRHRNYPKN---VRGPLTPASKLVLHPSRNKTI 176
           RF V  + NT     +K + +R  P     +R P TP      +PS N  I
Sbjct: 68  RFRVSYSNNTGYVEMSKFIEYRTLPSTPNTIRSPSTPPIFYPTYPSPNSII 118


>Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical
           protein T19C9.1 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = +1

Query: 148 LCFVVWLTKILSCCGKDVIQVYLRVLKDLVHFWDNYDGAAFYLA 279
           L + ++++K L C   D++ +Y+R+  D+V+ +  +   A+Y+A
Sbjct: 26  LLYSIFVSKKL-CRKPDLVLIYIRISVDMVYSFSAFLIQAYYIA 68


>Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical
           protein C40C9.2 protein.
          Length = 534

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/47 (21%), Positives = 27/47 (57%)
 Frame = -2

Query: 155 KHNYRLPLRVNLLFITINTIPLLVVRHVTSVVIIYLSKYLRVVCIKV 15
           +HN+ +P+  + +   +    ++   +V  VV+  L+KY++  C+++
Sbjct: 426 QHNHLMPVAPSEMTPRVTYSKVMAESYVEDVVMTELNKYMQKACLEL 472


>Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical
           protein T04A8.2 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 191 PQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRHVTSVVIIYLSKYLRVV--CIK 18
           P    I++ +  K  +    R  L+FITI  +  +V   V    ++ L K LR V   + 
Sbjct: 181 PTFGGIYMEYIKKVAWASQSRFQLIFITIALLFTIVCTSVIFYTLVMLPKRLRNVERTLS 240

Query: 17  VGTA 6
           +GTA
Sbjct: 241 LGTA 244


>AC199169-14|ABO33249.1|  389|Caenorhabditis elegans Hypothetical
           protein F38A1.1 protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 16/71 (22%), Positives = 35/71 (49%)
 Frame = +1

Query: 58  ITTDVT*RTTSNGIVLIVINNKFTRKGRR*LCFVVWLTKILSCCGKDVIQVYLRVLKDLV 237
           IT + + + T NG +L   +N +  +  +   +  +  K+  C G  + +  +RV + +V
Sbjct: 201 ITEENSCKPTENGTILFAFSNDYGAQTVK-KAWDGYPFKVTPCSGYAIARFDVRVEESIV 259

Query: 238 HFWDNYDGAAF 270
           +F D  D  ++
Sbjct: 260 YFTDFGDAQSY 270


>AC024882-14|AAF60927.1|  360|Caenorhabditis elegans Hypothetical
           protein Y9C9A.1 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 131 RVNLLFITINTIPLLVVRHVTSVVIIYLSKYLRVVCIKV 15
           ++NL   +INT PLL +     V+I  L   + ++C KV
Sbjct: 6   KLNLSEFSINTEPLLTISSEMIVLITLLLFAIPILCNKV 44


>Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical
           protein Y49E10.14 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 222 HPQVNLYYILPATRQYFCKPHHEAQLSSPFTSEFV 118
           HPQ    + LP    YF  P  +AQ  +PF  +++
Sbjct: 239 HPQHQQQF-LPFPMPYFLAPPPQAQQGAPFPVQYI 272


>U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 222 HPQVNLYYILPATRQYFCKPHHEAQLSSPFTSEFV 118
           HPQ    + LP    YF  P  +AQ  +PF  +++
Sbjct: 239 HPQHQQQF-LPFPMPYFLAPPPQAQQGAPFPVQYI 272


>U40412-4|AAV28342.1|  618|Caenorhabditis elegans Hypothetical
           protein F46G11.1 protein.
          Length = 618

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 319 RFNVKVNKNTYLSPPNKMLRHRNYPKNVRGPL 224
           RFNV+V  +TY  P     R+R     +R P+
Sbjct: 99  RFNVRVQTDTYGQPAILFPRYRGMTSRLRIPM 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,892,679
Number of Sequences: 27780
Number of extensions: 183245
Number of successful extensions: 471
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)