Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a09
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0337 - 2432823-2432933,2433280-2433373,2434079-2434170,243...    29   5.2  
12_01_0640 - 5391407-5391523,5391659-5391748,5391837-5391901,539...    28   6.8  
03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143           28   9.0  
01_06_1015 + 33819203-33821827                                         28   9.0  

>06_01_0337 -
           2432823-2432933,2433280-2433373,2434079-2434170,
           2434565-2434679,2435253-2435335,2435544-2435654,
           2435884-2435971,2436004-2436326
          Length = 338

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 592 TITNDSEMETKSVIPDTGAKCGRHYQFTDEE 684
           T+  ++  + K++ PD GA     YQ+TD E
Sbjct: 167 TLVKETGQKVKAIFPDAGAAALLKYQWTDAE 197


>12_01_0640 -
           5391407-5391523,5391659-5391748,5391837-5391901,
           5392201-5392288,5392511-5392589,5393232-5393370,
           5393530-5393863
          Length = 303

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 472 IDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTI 597
           +D D  T+K +S L  VEH   +GE       N I+K  T +
Sbjct: 202 VDVDRYTVKYNSALELVEHLRAMGETNALFQRNPILKKDTAL 243


>03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143
          Length = 379

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 146 NFET*IRYLNLFYFIPTSYPLNRIHSFIAKFNISRQV 36
           NF + +R LN ++ + T+Y   R H +  +F   R++
Sbjct: 85  NFSSFVRQLNTYFLVRTNYLNKRSHFYSLRFQGFRKI 121


>01_06_1015 + 33819203-33821827
          Length = 874

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 353 SLESTSTTRTKTLMIISVRSVYHLWVE 433
           SL+  +TTR+  L I S+ +V  LW+E
Sbjct: 659 SLKRLATTRSSDLNITSMEAVRELWIE 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,459,928
Number of Sequences: 37544
Number of extensions: 296262
Number of successful extensions: 467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)