Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3a08
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97004-6|AAO26010.1| 304|Caenorhabditis elegans Hypothetical pr... 128 3e-30
U97004-4|AAB52276.1| 337|Caenorhabditis elegans Hypothetical pr... 128 3e-30
Z83236-2|CAB05778.1| 337|Caenorhabditis elegans Hypothetical pr... 126 2e-29
Z78415-10|CAB01676.2| 341|Caenorhabditis elegans Hypothetical p... 125 3e-29
AF016425-2|AAB65342.1| 337|Caenorhabditis elegans Hypothetical ... 119 2e-27
Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical pr... 92 4e-19
Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical pr... 92 4e-19
AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical ... 92 4e-19
U97004-5|AAO26009.1| 240|Caenorhabditis elegans Hypothetical pr... 74 1e-13
AF077539-2|AAK84579.2| 427|Caenorhabditis elegans Hypothetical ... 59 3e-09
Z81054-11|CAB02888.1| 430|Caenorhabditis elegans Hypothetical p... 50 2e-06
Z70683-7|CAA94593.1| 430|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z70683-3|CAA94589.1| 435|Caenorhabditis elegans Hypothetical pr... 46 4e-05
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 30 2.0
Z81047-11|CAB02837.1| 226|Caenorhabditis elegans Hypothetical p... 29 3.5
AL032663-7|CAA21763.1| 226|Caenorhabditis elegans Hypothetical ... 29 3.5
AF039046-12|AAB94215.1| 299|Caenorhabditis elegans Hydroxy-acyl... 29 3.5
U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical pr... 29 4.6
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 28 6.0
>U97004-6|AAO26010.1| 304|Caenorhabditis elegans Hypothetical
protein R08E5.2c protein.
Length = 304
Score = 128 bits (310), Expect = 3e-30
Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 2/205 (0%)
Frame = +3
Query: 120 DLIGNTPIVALDRLHPG-PGRILAKCEFMNPGASIKCRSSLCMIKKALASGELKP-KEPV 293
D IGNTP+V L + G RI K E++NP S+K R + M+ +A +G + P K +
Sbjct: 12 DTIGNTPLVLLRNISKGLDARIAVKVEYLNPSCSVKDRIAKSMVDEAEKAGTIVPGKTVL 71
Query: 294 VEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGTYGNVT 473
VE TSGN G LA + + G+ + L M S +R + A GA+ + EG G
Sbjct: 72 VEGTSGNLGIALAHIGKIRGYKVILVMPATMSVERRAMLRAYGAEVILSDPAEGHPG--- 128
Query: 474 LNDVKAVEEVGLRIVKETGAYYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXX 653
+++V + + K A+ ++QF+N AN +HY+TTGPEIWRQT +VD
Sbjct: 129 -----VIKKVEMLVDKLPNAHCLDQFSNPANPAAHYRTTGPEIWRQTEGKVDIVCFGVGS 183
Query: 654 XXXXXXXXRYLKEKNPDLKAYVVEP 728
RYL+E+NP+++ Y VEP
Sbjct: 184 SGTVTGVGRYLREQNPNIEIYPVEP 208
>U97004-4|AAB52276.1| 337|Caenorhabditis elegans Hypothetical
protein R08E5.2a protein.
Length = 337
Score = 128 bits (310), Expect = 3e-30
Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 2/205 (0%)
Frame = +3
Query: 120 DLIGNTPIVALDRLHPG-PGRILAKCEFMNPGASIKCRSSLCMIKKALASGELKP-KEPV 293
D IGNTP+V L + G RI K E++NP S+K R + M+ +A +G + P K +
Sbjct: 12 DTIGNTPLVLLRNISKGLDARIAVKVEYLNPSCSVKDRIAKSMVDEAEKAGTIVPGKTVL 71
Query: 294 VEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGTYGNVT 473
VE TSGN G LA + + G+ + L M S +R + A GA+ + EG G
Sbjct: 72 VEGTSGNLGIALAHIGKIRGYKVILVMPATMSVERRAMLRAYGAEVILSDPAEGHPG--- 128
Query: 474 LNDVKAVEEVGLRIVKETGAYYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXX 653
+++V + + K A+ ++QF+N AN +HY+TTGPEIWRQT +VD
Sbjct: 129 -----VIKKVEMLVDKLPNAHCLDQFSNPANPAAHYRTTGPEIWRQTEGKVDIVCFGVGS 183
Query: 654 XXXXXXXXRYLKEKNPDLKAYVVEP 728
RYL+E+NP+++ Y VEP
Sbjct: 184 SGTVTGVGRYLREQNPNIEIYPVEP 208
>Z83236-2|CAB05778.1| 337|Caenorhabditis elegans Hypothetical
protein K10H10.2 protein.
Length = 337
Score = 126 bits (303), Expect = 2e-29
Identities = 79/205 (38%), Positives = 110/205 (53%), Gaps = 2/205 (0%)
Frame = +3
Query: 120 DLIGNTPIVALDRLHPGPGRILA-KCEFMNPGASIKCRSSLCMIKKALASGELKP-KEPV 293
+LIGNTP++ L+++ G +A K E+MNP S+K R + MI A +G + P K +
Sbjct: 12 ELIGNTPLLKLNKIGKDLGASIAVKVEYMNPACSVKDRIAFNMIDTAEKAGLITPGKTVL 71
Query: 294 VEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGTYGNVT 473
+E TSGN G LA + G+ + L M S +R ++A GA+ + G V
Sbjct: 72 IEPTSGNMGIALAYCGKLRGYKVILTMPASMSIERRCLLKAYGAEVILTDPATAVKGAV- 130
Query: 474 LNDVKAVEEVGLRIVKETGAYYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXX 653
+ EE LR V AY +NQF N AN E+HY+TTGPEIWRQT +VD
Sbjct: 131 ----QRAEE--LRDVIPN-AYILNQFGNPANPEAHYKTTGPEIWRQTQGKVDIVCFGVGS 183
Query: 654 XXXXXXXXRYLKEKNPDLKAYVVEP 728
R+LKEKNP ++ + VEP
Sbjct: 184 GGTCTGVGRFLKEKNPSVQVFPVEP 208
>Z78415-10|CAB01676.2| 341|Caenorhabditis elegans Hypothetical
protein C17G1.7 protein.
Length = 341
Score = 125 bits (302), Expect = 3e-29
Identities = 78/215 (36%), Positives = 110/215 (51%), Gaps = 3/215 (1%)
Frame = +3
Query: 96 NEIKASALDLIGNTPIVALDRLHPG-PGRILAKCEFMNPGASIKCRSSLCMIKKALASGE 272
N I +A LIGNTP+V +++L G PG + K E+MNP S+K R M+ A G
Sbjct: 5 NSIGENAAALIGNTPMVYINKLTKGLPGTVAVKIEYMNPAGSVKDRIGAAMLAAAEKDGT 64
Query: 273 LKPK-EPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQV 449
+ P ++E TSGN G LA V A G+ + M S +R ++A G++ V
Sbjct: 65 VIPGVTTLIEPTSGNTGIALAFVAAAKGYRCIVTMPASMSGERRTLLKAYGSEVVLTDPA 124
Query: 450 EGTYGNVTL-NDVKAVEEVGLRIVKETGAYYVNQFNNDANSESHYQTTGPEIWRQTGHRV 626
+G G + + N +K E + G+ + QF+N N HYQTTGPEIWRQT V
Sbjct: 125 KGMKGAIDMANQLK--ENI-------PGSIILAQFDNPNNPLVHYQTTGPEIWRQTKGTV 175
Query: 627 DXXXXXXXXXXXXXXXXRYLKEKNPDLKAYVVEPE 731
D RYL+E+NP ++ + VEPE
Sbjct: 176 DAVVFGVGTGGTITGVGRYLQEQNPGVRVFAVEPE 210
>AF016425-2|AAB65342.1| 337|Caenorhabditis elegans Hypothetical
protein F59A7.9 protein.
Length = 337
Score = 119 bits (287), Expect = 2e-27
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 2/205 (0%)
Frame = +3
Query: 120 DLIGNTPIVALDRLHPG-PGRILAKCEFMNPGASIKCRSSLCMIKKALASGELKP-KEPV 293
D +GNTP+V L + G RI K E++NP S+K R + M+ A +G++ P K +
Sbjct: 12 DTVGNTPLVLLRNITKGLDARIAVKIEYLNPSCSVKDRIAKTMVDDAEKAGKIVPGKTVL 71
Query: 294 VEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGTYGNVT 473
VE TSGN G LA + + G+ + L M+ S +R + A GA+ + EG G
Sbjct: 72 VEGTSGNLGIALAHIGRIRGYKVILVMTTAMSIERRAMLRAYGAEVILSDPAEGHPG--- 128
Query: 474 LNDVKAVEEVGLRIVKETGAYYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXXXXXXX 653
V+++ + + K AY ++QF+N +N +HY+TTGPEIW+QT +VD
Sbjct: 129 -----IVKKIEMLVSKLPDAYCLDQFSNPSNPAAHYRTTGPEIWKQTQGKVDMVCFGVGS 183
Query: 654 XXXXXXXXRYLKEKNPDLKAYVVEP 728
RYL+ + ++ Y VEP
Sbjct: 184 GGTVTGVGRYLRAQKQNIGVYPVEP 208
>Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical protein
ZC373.1 protein.
Length = 704
Score = 91.9 bits (218), Expect = 4e-19
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 8/217 (3%)
Frame = +3
Query: 111 SALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMI---KKALASGE 272
+ LD IG TP+V L + G + KCE+MN G S K R + M+ +K G+
Sbjct: 381 TVLDAIGKTPLVKLQHIPKAHGVKCNVYVKCEYMNAGGSTKDRIAKRMVEIAEKTGKPGK 440
Query: 273 LKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVE 452
L P ++E TSGN G GL++ AV G+ + M K S +++I M +LG+ +R P
Sbjct: 441 LVPGVTLIEPTSGNTGIGLSLASAVRGYKCIITMPKKMSKEKSIAMASLGSTIIRTPNEA 500
Query: 453 GTYGNVTLNDVKAVEEVGLRIVKE-TGAYYVNQFNNDANSESHYQTTGPEIWRQTGHR-V 626
G + + V LR+ E A ++Q+ N N +HY+ T EI G + +
Sbjct: 501 G------FDSPHSHIGVALRLKSEIQDAVVLDQYCNPGNPLAHYEETAEEIIYDMGDKHI 554
Query: 627 DXXXXXXXXXXXXXXXXRYLKEKNPDLKAYVVEPEGA 737
D R + E+ P K V+P G+
Sbjct: 555 DLVVLTAGTGGTVTGISRKIHERIPTAKVVGVDPHGS 591
>Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical protein
ZC373.1 protein.
Length = 704
Score = 91.9 bits (218), Expect = 4e-19
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 8/217 (3%)
Frame = +3
Query: 111 SALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMI---KKALASGE 272
+ LD IG TP+V L + G + KCE+MN G S K R + M+ +K G+
Sbjct: 381 TVLDAIGKTPLVKLQHIPKAHGVKCNVYVKCEYMNAGGSTKDRIAKRMVEIAEKTGKPGK 440
Query: 273 LKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVE 452
L P ++E TSGN G GL++ AV G+ + M K S +++I M +LG+ +R P
Sbjct: 441 LVPGVTLIEPTSGNTGIGLSLASAVRGYKCIITMPKKMSKEKSIAMASLGSTIIRTPNEA 500
Query: 453 GTYGNVTLNDVKAVEEVGLRIVKE-TGAYYVNQFNNDANSESHYQTTGPEIWRQTGHR-V 626
G + + V LR+ E A ++Q+ N N +HY+ T EI G + +
Sbjct: 501 G------FDSPHSHIGVALRLKSEIQDAVVLDQYCNPGNPLAHYEETAEEIIYDMGDKHI 554
Query: 627 DXXXXXXXXXXXXXXXXRYLKEKNPDLKAYVVEPEGA 737
D R + E+ P K V+P G+
Sbjct: 555 DLVVLTAGTGGTVTGISRKIHERIPTAKVVGVDPHGS 591
>AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical
protein F54A3.4 protein.
Length = 755
Score = 91.9 bits (218), Expect = 4e-19
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 9/218 (4%)
Frame = +3
Query: 111 SALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASGE--- 272
S LD IG TP+V L + G + KCEF+N G S K R + M++ A +G+
Sbjct: 339 SVLDAIGKTPLVKLQHVPKAHGVRCNVYVKCEFLNAGGSTKDRIAKKMVEIAEKTGKPGA 398
Query: 273 LKP-KEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQV 449
L P ++E TSGN G GL++V AV G+ + M + S +++ + LG+ VR P
Sbjct: 399 LTPGATTLIEPTSGNTGIGLSLVAAVRGYKCLITMPEKMSKEKSTTLSVLGSTIVRTP-- 456
Query: 450 EGTYGNVTLNDVKAVEEVGLRIVKE-TGAYYVNQFNNDANSESHYQTTGPEI-WRQTGHR 623
N + V LR+ E GA ++Q+ N N +HY+ T EI W +
Sbjct: 457 ----NEAAFNSPSSHIGVALRLKHEIPGAVILDQYCNPGNPLAHYEETAEEILWDMGDRK 512
Query: 624 VDXXXXXXXXXXXXXXXXRYLKEKNPDLKAYVVEPEGA 737
+D R + E+ P+ V+P G+
Sbjct: 513 IDLVVLGAGTGGTITGISRKIHERRPNAIVVGVDPNGS 550
>U97004-5|AAO26009.1| 240|Caenorhabditis elegans Hypothetical
protein R08E5.2b protein.
Length = 240
Score = 73.7 bits (173), Expect = 1e-13
Identities = 40/114 (35%), Positives = 61/114 (53%)
Frame = +3
Query: 387 SAQRAIHMEALGAKCVRVPQVEGTYGNVTLNDVKAVEEVGLRIVKETGAYYVNQFNNDAN 566
S +R + A GA+ + EG G +++V + + K A+ ++QF+N AN
Sbjct: 6 SVERRAMLRAYGAEVILSDPAEGHPG--------VIKKVEMLVDKLPNAHCLDQFSNPAN 57
Query: 567 SESHYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXXRYLKEKNPDLKAYVVEP 728
+HY+TTGPEIWRQT +VD RYL+E+NP+++ Y VEP
Sbjct: 58 PAAHYRTTGPEIWRQTEGKVDIVCFGVGSSGTVTGVGRYLREQNPNIEIYPVEP 111
>AF077539-2|AAK84579.2| 427|Caenorhabditis elegans Hypothetical
protein T25D3.3 protein.
Length = 427
Score = 59.3 bits (137), Expect = 3e-09
Identities = 46/159 (28%), Positives = 76/159 (47%)
Frame = +3
Query: 111 SALDLIGNTPIVALDRLHPGPGRILAKCEFMNPGASIKCRSSLCMIKKALASGELKPKEP 290
S +L+G+TPI +D R++ K E + S+K R S ++ AL G +K
Sbjct: 57 SERNLMGSTPIHVIDPPGLPSVRLVFKNESASLTGSLKHRYSWSLMMWALLEGHVKNGTH 116
Query: 291 VVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGTYGNV 470
V E +SGN C L +C +LG T A+ Q K R+ + EG V
Sbjct: 117 VFEASSGNTACSLGYMCRLLGLQFT-AVVPDTIEQ---------VKVRRIEEQEGFVVRV 166
Query: 471 TLNDVKAVEEVGLRIVKETGAYYVNQFNNDANSESHYQT 587
++D + E ++ K TG +++NQF N ++E +++
Sbjct: 167 PISDRLIIAE---QLAKSTGGFFMNQFKNAFHAEEFHES 202
>Z81054-11|CAB02888.1| 430|Caenorhabditis elegans Hypothetical
protein F01D4.8 protein.
Length = 430
Score = 49.6 bits (113), Expect = 2e-06
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Frame = +3
Query: 126 IGNTPIVALDRLHPG-PGR-ILAKCEFMNPGASIKCRSSLCMIKKALASGELKPKEPVV- 296
+G+TP+V PG P I K E ++ ++K R + ++ A+ G++ K V
Sbjct: 56 MGHTPLVKFSP--PGFPNTDIFFKNETVSATRTLKHRFAWALLLWAIVEGKVTSKTSAVY 113
Query: 297 EVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGTYGNVTL 476
+ TSGN G A +C ++G P +S+ ++ ++E G K ++VP T T
Sbjct: 114 DATSGNMGSAEAYMCTLVGIPYFAVVSEECEQEKIDNIEKFGGKVIKVP----TALRTTK 169
Query: 477 NDVKAVEEVGLRIVKETGAYYVNQFNNDAN 566
++ A+E G I ++ A +F+ +
Sbjct: 170 SNEFAIENNGFYINQQKNAALAEEFHESGD 199
>Z70683-7|CAA94593.1| 430|Caenorhabditis elegans Hypothetical
protein F01D4.8 protein.
Length = 430
Score = 49.6 bits (113), Expect = 2e-06
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Frame = +3
Query: 126 IGNTPIVALDRLHPG-PGR-ILAKCEFMNPGASIKCRSSLCMIKKALASGELKPKEPVV- 296
+G+TP+V PG P I K E ++ ++K R + ++ A+ G++ K V
Sbjct: 56 MGHTPLVKFSP--PGFPNTDIFFKNETVSATRTLKHRFAWALLLWAIVEGKVTSKTSAVY 113
Query: 297 EVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGTYGNVTL 476
+ TSGN G A +C ++G P +S+ ++ ++E G K ++VP T T
Sbjct: 114 DATSGNMGSAEAYMCTLVGIPYFAVVSEECEQEKIDNIEKFGGKVIKVP----TALRTTK 169
Query: 477 NDVKAVEEVGLRIVKETGAYYVNQFNNDAN 566
++ A+E G I ++ A +F+ +
Sbjct: 170 SNEFAIENNGFYINQQKNAALAEEFHESGD 199
>Z70683-3|CAA94589.1| 435|Caenorhabditis elegans Hypothetical
protein F13B12.4 protein.
Length = 435
Score = 45.6 bits (103), Expect = 4e-05
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Frame = +3
Query: 126 IGNTPIVALDRLHPGPGRILAKCEFMNPGASIKCRSSLCMIKKALASGELKPKEPVV-EV 302
+G+TP+ I K E ++K R + ++ A+ G++ K V +
Sbjct: 57 MGHTPMTKFSPPGFPNADIFFKNETATATRTLKHRFAWALLLWAITEGKVTSKTSAVYDS 116
Query: 303 TSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGTYGNVTLND 482
TSGN G A +C ++ P ++ ++ +E+ G K ++VP V L +
Sbjct: 117 TSGNTGSAEAYMCTLVNVPYYAVVADNLEKEKVKQIESFGGKIIKVP--------VALRN 168
Query: 483 VKAVEEVGLRIVKETGAYYVNQFNNDANSESHYQT 587
KA E + +Y+NQF N +E +++
Sbjct: 169 AKAKE-----FADKNHGFYMNQFGNAEKAEEFHES 198
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 416 SRGQMRKSSASGRHVRKRDFERCKSSGGSR--PKNCKGNRRILCESVQQR 559
SR SS RH ++R R +SS GSR P + +RR C+ ++R
Sbjct: 170 SRSGRTSSSDRDRHSKRRSRSRSRSSSGSRTPPYKSRSSRR-RCKDFEER 218
>Z81047-11|CAB02837.1| 226|Caenorhabditis elegans Hypothetical
protein C41G6.13 protein.
Length = 226
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = -1
Query: 535 YAPVSFTILRPTSSTAFTSFKVTFPYVPSTCGTLTHLAPRAS----ICMAL*ALFPFDMA 368
+AP+ ++ + + F PY +T GT +H+ P+ + + P D+A
Sbjct: 65 FAPLKESVTKTPADEEAAHFTHRPPYRHATKGTNSHVTPKDNREVMFTWKILTWKPEDLA 124
Query: 367 SVSG*PNTAHTTASP 323
+VS P+T T A P
Sbjct: 125 AVSKKPHTKGTKAPP 139
>AL032663-7|CAA21763.1| 226|Caenorhabditis elegans Hypothetical
protein Y75B12B.8 protein.
Length = 226
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = -1
Query: 535 YAPVSFTILRPTSSTAFTSFKVTFPYVPSTCGTLTHLAPRAS----ICMAL*ALFPFDMA 368
+AP+ ++ + + F PY +T GT +H+ P+ + + P D+A
Sbjct: 65 FAPLKESVTKTPADEEAAHFTHRPPYRHATKGTNSHVTPKDNREVMFTWKILTWKPEDLA 124
Query: 367 SVSG*PNTAHTTASP 323
+VS P+T T A P
Sbjct: 125 AVSKKPHTKGTKAPP 139
>AF039046-12|AAB94215.1| 299|Caenorhabditis elegans
Hydroxy-acyl-coa dehydrogenaseprotein 1 protein.
Length = 299
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 264 SGELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTL 368
SG PK V +G G G+A VC G+P+ L
Sbjct: 4 SGNENPKPLVAIFGAGMMGSGIAQVCLQAGYPVNL 38
>U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical
protein C30G12.1 protein.
Length = 469
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 499 SSTAFTSFKVTFPYVPSTCG 440
SS++F SF+ +FP +P CG
Sbjct: 90 SSSSFDSFEASFPTIPKFCG 109
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 28.3 bits (60), Expect = 6.0
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 15 GITVVNKCLSV*LFSLSCAMANNNSVDNEI-KASALDLIGNTPIVALDRLHPGPGRILAK 191
G N S FSL A ++DN + + +G +VAL P P +L
Sbjct: 363 GTIAANLTTSFVYFSL--AFIFGGAIDNAVLRDKNGQSVGGQMVVAL-LSWPSPWVLLIG 419
Query: 192 CEFMNPGASIKCRSSLCMIKKALASGELKP-KEPVVEVTSGNQ 317
GA+++C S + +A+A E+ P P +VT+ N+
Sbjct: 420 SFLSTFGAALQCLCSAPRLLQAIAKDEVIPLLSPFKKVTANNE 462
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,437
Number of Sequences: 27780
Number of extensions: 383635
Number of successful extensions: 997
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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