Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a07
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   1.8  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   3.1  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   3.1  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   4.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   4.1  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    26   7.1  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    25   9.4  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 400 PYCMESCQNATHYCPNCNAYIGT 468
           PY + +C N T Y  NCN+ + T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +3

Query: 291 LLYRGHRN*GSTRCFEQDSSFCVNPLFDRMLAMCLHPLLHGKLSKCYSLLSELQRLHWNL 470
           +LY G    G  R F++      NP++D  +  CL+P L GKL   + +  E+ R+ W +
Sbjct: 164 VLYTGTLLFGD-RLFDKPHRLSGNPIYDAFMGACLNPRL-GKLLD-FKMFFEV-RIPWFI 219

Query: 471 YKLMSL 488
              +S+
Sbjct: 220 LFFISV 225


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 516 NVFFLFAFITNSSICIGSNVGVAIRTVMSSILTAFHAVRDA 394
           N+FFLF  I  S    G  V   +  V   ++    AV+DA
Sbjct: 114 NLFFLFLVILQSISIFGEQVNPGLAAVPLIVVVGITAVKDA 154


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 555 KQLKRDICTPN*NNVFFLFAFITNSSIC 472
           K++KR I  PN  + F LF  ITN   C
Sbjct: 79  KEIKRGIRDPNSEDPFELFCSITNIRYC 106


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 665 YNKLFCDKFSNTGMSYYSTN 724
           YN +F D+F+  G S+YS N
Sbjct: 238 YNLVFSDEFNKEGRSFYSGN 257


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 402 LLHGKLSKCYSLLSELQRLHWNLY 473
           +L G +S+C S+ S  Q+LH N+Y
Sbjct: 133 VLQGNISQCLSVASTFQKLH-NMY 155


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 558 SLMNFILNMSQYIFP*FEKNH*ILLSGTFYLCFVIFIINYFATSFP 695
           SL   ILN  +Y+   F+K+  + +S  F   +    I Y + SFP
Sbjct: 90  SLYPIILNAFEYLIKEFKKDVFLKISDVFVCVYSNLNILYISRSFP 135


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 418 CQNATHYCPNCNAYIGTYTN**VCDKC 498
           C+     CP C++++   T   +CD+C
Sbjct: 23  CERCDEKCPICDSHVRPTTLVRICDEC 49


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 618 DFFQIRERYTVTYLI*SS*ENKQLKRDIC 532
           DF+ I ER+ + Y+I  +   + L + IC
Sbjct: 42  DFYVINERFFIKYIIKKNKNPQNLTKSIC 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,363
Number of Sequences: 5004
Number of extensions: 59694
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)