Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a07
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196...    30   1.8  
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278...    28   9.8  
02_02_0228 - 8074734-8074737,8075533-8076569                           28   9.8  
01_06_1070 - 34286660-34287380,34288020-34288094,34288534-342886...    28   9.8  

>02_05_0888 -
           32517876-32518087,32518320-32518694,32519551-32519638,
           32520145-32520384,32521033-32521149,32521213-32521606,
           32521752-32521998,32522086-32522315,32522768-32522823,
           32522903-32523094,32523274-32523376,32523478-32523544,
           32524312-32525154,32525547-32525670,32525965-32526213,
           32526354-32526443,32526530-32526649,32526664-32526738,
           32527001-32527147,32527255-32527365,32527446-32527667,
           32527777-32527896,32527971-32528270,32528355-32528480,
           32529246-32529360,32529556-32530019,32530119-32530253,
           32530684-32530788,32530876-32531053,32531143-32531864
          Length = 2188

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +2

Query: 494 NANKKKTLFQLGVHISLFNCLFSYELYIKYVTVYLSLI*KKSLDIVVRNILFMFCYIYNK 673
           ++NKK +L     HIS    L S E   K ++ Y++ + K   + +  N      Y+   
Sbjct: 463 HSNKKNSLSHSDDHISFVAYLDSLEFLCKILSQYVNAVWKNFSEGITPNYSINMTYVLTA 522

Query: 674 LFCDKFSNTGMSYYS 718
           L   +F N+ ++ YS
Sbjct: 523 L--HQFINSSIAAYS 535


>03_05_0448 -
           24426509-24426737,24427306-24427401,24427723-24427847,
           24428694-24428846,24429921-24430247,24431415-24431630,
           24431768-24432112,24433897-24434253
          Length = 615

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 246 HNRHELLRSHDGDDRNISIWN 184
           H RHE L    GDD N+ IW+
Sbjct: 427 HLRHEYLFGSVGDDHNLLIWD 447


>02_02_0228 - 8074734-8074737,8075533-8076569
          Length = 346

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 446 IATPTLEPIQIDEFVINANKKKTLFQLGVHISLFN 550
           +AT TL  + +D+   +A  ++TLF++ VH SL N
Sbjct: 74  VATATLPAVPLDDLPADAGLERTLFEV-VHRSLPN 107


>01_06_1070 -
           34286660-34287380,34288020-34288094,34288534-34288636,
           34288866-34289091
          Length = 374

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 92  WLTLNIKEICLARTMGLLHKIRLLTT 169
           WL  NIKEI  +  +GL+H+I +L++
Sbjct: 146 WLVTNIKEIKDSGCIGLVHEIGVLSS 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,503,232
Number of Sequences: 37544
Number of extensions: 341739
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)