Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a03
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   2.1  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   4.9  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   4.9  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   8.6  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.6  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   8.6  

>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 279 LSDQGVPDHVIQTYCFFMATFTIVRHY 359
           L D+G P+H+I+   +F+   T+ RHY
Sbjct: 800 LRDEGTPNHLIKHNSYFLLP-TVSRHY 825


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 165 PKIENVAFRLHYQLTVTILLAFVILVC 245
           PK+ N  F L+Y L +T+     I++C
Sbjct: 485 PKVANTMFNLNYFLGITVACLSHIIIC 511


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 335 GHEEAVRLNYMVGHTLIRKTFDVIP 261
           GH   +   Y+V HTL++  F V+P
Sbjct: 699 GHSNNINDAYVVIHTLLKVIFSVVP 723


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 332 HEEAVRLNYMVGHTLIRKTFDVIPEILSSADQDHESQQNRHS 207
           HE   +L+ + G   I  T+ V  E +S  ++D ESQ   HS
Sbjct: 350 HESGKQLDLLSGIAAIL-TYPVDEEDISEDEEDEESQNFEHS 390


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 263 PEILSSADQDHESQQNRHSQLVMQPEGHILDLRFAKLEPQPRRETVK 123
           PEI+   +   E+   +  Q ++Q  G   DL+   L+ + ++E++K
Sbjct: 20  PEIIGGQNNFLENNLQQIFQKIIQERGPFRDLKEEDLQKELQKESIK 66


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 612 VPSKKTLENKLDSIRKDIILRLKISRTWS 698
           +  KKT+   +DSI K  IL  K+  T+S
Sbjct: 96  IECKKTVALSMDSITKTCILNYKLEWTYS 124


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 26  DERVSVSRLHNHSVRADIISQLSIIFQDVSRVA*QSLAAAAVPI*QTEDRECGLQAALPA 205
           +E+  +  LH HSV+ D +S++ +       V+  SL A  V   ++ D    L    P 
Sbjct: 212 EEQKMIENLHKHSVQIDDLSKILVSAHRAQTVS--SLDAVLVDEVESSDSLSSLGKEKPV 269

Query: 206 DCD 214
             D
Sbjct: 270 QID 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,998
Number of Sequences: 5004
Number of extensions: 60779
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)