Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a03
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600...    30   1.7  
01_06_0912 + 32933362-32933515,32933628-32933697,32933893-329340...    29   5.2  
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411...    28   6.8  
02_01_0249 - 1644280-1645161,1645328-1645432,1646322-1646805,164...    28   9.0  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    28   9.0  

>01_01_0774 -
           6004040-6004371,6004634-6005215,6005391-6005657,
           6005845-6006163
          Length = 499

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 237 LVCAREYFGDHIKCLSDQGVPDHVIQTYCFFM----ATFTIVRHYNESLLQGE 383
           +V A   F DH K    +G+    ++T CFFM    AT  ++  +N  +L GE
Sbjct: 206 VVVASAIFNDHDKIRQPKGLGSETLRTVCFFMFIDDATHRVLASHN--ILAGE 256


>01_06_0912 +
           32933362-32933515,32933628-32933697,32933893-32934035,
           32934127-32934637,32934693-32934729,32935254-32935350,
           32936774-32937153
          Length = 463

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 507 IWKTKEGGRIKALVDGLQYAGLAL 578
           IW+ + G ++KA+ +G+Q AG AL
Sbjct: 295 IWRDRVGKKVKAVREGVQAAGAAL 318


>03_05_0487 +
           24838620-24838967,24840526-24840747,24840819-24841109,
           24841316-24841513,24841641-24841705,24841788-24841874,
           24841988-24842108,24842200-24842244,24842321-24842458,
           24842571-24842643,24842723-24842799,24842882-24842989,
           24843108-24843224,24843524-24843679,24843780-24843881,
           24844036-24844161,24844237-24844314,24844390-24844485,
           24844592-24844707,24844781-24844850,24844930-24844983,
           24845062-24845205,24845297-24845596,24845780-24846202,
           24846316-24846429
          Length = 1222

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 357 YNESLLQGEFLPHPGVGPILATDETIHHTY 446
           Y + +LQ E LPH GVG    T +  +  Y
Sbjct: 376 YAKEILQKEMLPHVGVGEFCETKKAYYFGY 405


>02_01_0249 -
           1644280-1645161,1645328-1645432,1646322-1646805,
           1647680-1647884,1648538-1648808
          Length = 648

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 450 GNTCGGWSRLWQGWA 406
           G+ CGGW+  WQG A
Sbjct: 464 GSQCGGWTITWQGLA 478


>01_03_0103 -
           12567986-12568141,12568307-12568442,12568751-12568824,
           12568932-12569175,12569480-12569766,12570618-12571103,
           12571348-12571459,12571540-12571745,12573071-12573276,
           12573831-12574162,12574284-12574825,12574967-12576308,
           12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 25/102 (24%), Positives = 42/102 (41%)
 Frame = +3

Query: 339 FTIVRHYNESLLQGEFLPHPGVGPILATDETIHHTYYQWVPFVLFIQSICFYLPHYIWKT 518
           FT    +N+    G  + HP + P+L   ET    Y         +++I  Y P  +W  
Sbjct: 525 FTGFSEFNDIHPSGH-VRHPNILPVLGIVETYDCCYMLHPKSPYTLENIMHYSPEALW-- 581

Query: 519 KEGGRIKALVDGLQYAGLALHDDDITVNGTTVPSKKTLENKL 644
                I+ L+  +  A + LHD  +  +G   PS   + + L
Sbjct: 582 -SDWHIRFLIYQIISALVYLHDSGVH-HGNLKPSAIFMSDSL 621


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,255,751
Number of Sequences: 37544
Number of extensions: 436097
Number of successful extensions: 1121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)