Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a03
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    27   0.25 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   7.0  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 148 RSRGERLLSDATNILKDYTQLTYDVGSD 65
           R    R L+++ N++ ++  L YD GSD
Sbjct: 24  RENSPRKLANSMNVIHEWKYLDYDFGSD 51


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 326 EAVRLNYMVGHTLIRKTFDVIPEILSSADQDHESQQNRHSQLVMQPEGHILDLRFAKLE 150
           E   L   +G    R  FD++P ILS+   D +     +  ++  P  H     F KLE
Sbjct: 211 EFTELCMKLGWKSARTRFDILPLILSANGHDPDYFDIPNELVLEVPLSHPTYDWFEKLE 269


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 151 NRSRGERLLSDATNILKDYTQLTYDVGSD 65
           ++ +  + L  + N++ ++  + YD GSD
Sbjct: 23  HQRKSSKNLEHSMNVIHEWKYIDYDFGSD 51


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 148 RSRGERLLSDATNILKDYTQLTYDVGSD 65
           R    R L  + N++ ++    YD GS+
Sbjct: 21  RENSPRNLEKSLNVIHEWKYFDYDFGSE 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,926
Number of Sequences: 438
Number of extensions: 4580
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)