Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3a02
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    24   1.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -3

Query: 733 LSVSFITYYLTSLINS*YQIVNSFFISLLSKVPNWYYFYQVQLCFWYSLSI 581
           LS   +T +L +     +Q+  SF++   + +   YYF  + L     +S+
Sbjct: 285 LSYIILTSFLNNFYFIIFQVFESFYLHKATTLETVYYFISLGLLILRLVSV 335


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 432 FTN*E-NYVFYLDSSCSTNFHCPMCCFCYKFN 340
           FT  E N VF    +   NF+  M C  YKF+
Sbjct: 448 FTKFEFNTVFNDQRTVFANFYDAMICVAYKFD 479


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 638  PKLVLLLSGPIMFLVFIINQSRSMASVVW 552
            P ++ LLS P M+L+ I+    ++  V W
Sbjct: 1031 PGIIYLLSIPSMYLLLILYSIINLNVVSW 1059


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 638  PKLVLLLSGPIMFLVFIINQSRSMASVVW 552
            P ++ LLS P M+L+ I+    ++  V W
Sbjct: 1031 PGIIYLLSIPSMYLLLILYSIINLNVVSW 1059


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 638  PKLVLLLSGPIMFLVFIINQSRSMASVVW 552
            P ++ LLS P M+L+ I+    ++  V W
Sbjct: 1031 PGIIYLLSIPSMYLLLILYSIINLNVVSW 1059


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 638  PKLVLLLSGPIMFLVFIINQSRSMASVVW 552
            P ++ LLS P M+L+ I+    ++  V W
Sbjct: 1031 PGIIYLLSIPSMYLLLILYSIINLNVVSW 1059


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,297
Number of Sequences: 336
Number of extensions: 3093
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)