Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30p24
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919...    31   0.82 
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851...    29   3.3  
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138           29   3.3  
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216...    28   4.4  
01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455     28   4.4  
08_02_0611 + 19317969-19318778                                         28   5.8  
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    28   5.8  
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581...    28   5.8  

>09_04_0588 -
           18789971-18790000,18790334-18790507,18791470-18791954,
           18792912-18793266
          Length = 347

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 117 FSFDCGDCDLCVNPCCLALS 176
           FSF C  C   ++PCC A+S
Sbjct: 136 FSFRCTSCSFAMHPCCAAMS 155


>12_02_0992 +
           25083397-25083537,25084198-25084228,25084971-25085139,
           25085228-25085291,25085408-25085474,25086543-25086586,
           25086835-25086922,25087079-25087238,25087659-25087779,
           25087859-25087942,25088043-25088162,25088689-25088901,
           25088995-25089054,25089144-25089262,25089407-25089465,
           25089585-25089919
          Length = 624

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 474 ECSNSNRVDTRYCNPFFRNDQWLFIG-TMAVEDNLDILVAGVEGNRDSLRLVVEGRDI 304
           EC NS+ +DT  C   + + Q  F G  M VE  + IL+   +   ++L     G  +
Sbjct: 381 ECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEALETEKNGHHL 438


>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
          Length = 244

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 96  NRRMGLCFSFDCGDCDLCVNPCCLAL-SACCLIPCLCPNA-CG 218
           +++  +    D  DC +C  P    +  AC   PC CP++ CG
Sbjct: 35  DKKQVVTIGMDVLDCPVCFEPFKPPIFQACSYEPCFCPDSGCG 77


>02_05_0665 -
           30720842-30721003,30721290-30721448,30721555-30721687,
           30722042-30722227,30722377-30722906
          Length = 389

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 60  ILKYFITVIKPNNRRMGLCF-SFDCGDCDLCVNPCC-LALSACCLIPCL 200
           I  YF+ +++ N   + + F +FD      CV   C + ++ CC +PC+
Sbjct: 226 ITDYFM-IVQSNVHMLSVVFLAFDVFFAVFCVAMACFIGIALCCCLPCV 273


>01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455
          Length = 249

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 537 GDGVSRWSAAEDHRNNRSKGTECSNSNRVDTRYCNPFFRNDQ 412
           GDG S W+A  D ++ ++K   C+++    +  C P  R  Q
Sbjct: 142 GDGDSEWAAHVDQQHKQAKAMPCTSACHFSSTRC-PIARGMQ 182


>08_02_0611 + 19317969-19318778
          Length = 269

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 FSFDCGDCDLCVNPCCLAL 173
           F F C D DL ++PCC +L
Sbjct: 105 FVFHCADRDLDLHPCCASL 123


>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
 Frame = +3

Query: 129 CGDCDLCVNPC-CLALSACCLIPCLCPNAC 215
           CG    C   C CL    CC   C CP  C
Sbjct: 651 CGCQSACGKQCPCLTNGTCCEKYCGCPKMC 680


>01_01_0753 -
           5814087-5814344,5814461-5814646,5814847-5815004,
           5815082-5815214,5815299-5815489,5815826-5816281,
           5816543-5816661,5816729-5816872,5816994-5817065,
           5817368-5817500,5817598-5817733
          Length = 661

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 362 LLVWRVTGIASVWWWRVGISG 300
           +LVWR  G A++  W+ G+SG
Sbjct: 325 ILVWRKRGRAAIGPWKTGLSG 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,582
Number of Sequences: 37544
Number of extensions: 252115
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)