Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30p24
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   6.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.3  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 495 NNRSKGTECSNSNRVDTRYCNPFFRNDQWLFIGTMAVE 382
           + RS G+   +  RV  R CN     D  LF+ T A E
Sbjct: 376 DKRSMGSH--HGQRVMVRTCNGLELRDPSLFVETSASE 411


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 326 WWWRVGISGL 297
           WWW + IS L
Sbjct: 366 WWWNMKISNL 375


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 123 FDCGDCDLCVNPCCLAL 173
           F  G C+  +NPC  AL
Sbjct: 48  FWLGYCNSAINPCIYAL 64


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 123 FDCGDCDLCVNPCCLAL 173
           F  G C+  +NPC  AL
Sbjct: 496 FWLGYCNSAINPCIYAL 512


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,664
Number of Sequences: 438
Number of extensions: 2367
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)