Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30p14
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    65   3e-12
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.16 
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   1.5  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   3.4  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    25   4.5  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   6.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   6.0  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    24   6.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    24   6.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.9  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        24   7.9  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    24   7.9  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    24   7.9  

>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 64.9 bits (151), Expect = 3e-12
 Identities = 28/48 (58%), Positives = 37/48 (77%)
 Frame = +1

Query: 4   EYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQV 147
           EY+  +DA + ++YI+ T LD+RIIR D D G+ EGRQYGRG +GGQV
Sbjct: 79  EYFENQDALDSLKYISRTSLDERIIRADLDHGYEEGRQYGRGASGGQV 126


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 16  REDAENCMRYINGTRLDDRIIRCDW 90
           R+ AE  M  +NGT +D R I  DW
Sbjct: 158 RKAAEEAMNSLNGTEIDGRPIAVDW 182


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 201 YFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVTANYSV 67
           Y + T+TP   ++S   S + S  ATTV +T    ++  T  Y+V
Sbjct: 183 YHNSTSTPPPTITSTKASTVTSTEATTVTTT-TAVTVTATETYTV 226


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 222 WVYFLCYYFSITATPTVIVSS 160
           W++ +C Y+ I  T T I+S+
Sbjct: 236 WMHLICSYYGIYTTSTQILSN 256


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 7   YYAREDAENCMRYINGTRLDDRIIRCDW 90
           +Y  E+A+  ++ +NG  ++ R +R +W
Sbjct: 250 FYRPEEAQVVVQTLNGYEINGRRLRVEW 277


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 201 YFSITATPTVIVSSIFISN 145
           +F ITAT   +++S+ +SN
Sbjct: 35  FFKITATTYALINSVIVSN 53


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 300 YDFILNSLVKFIIHINCNTLLTF*GIWVYFLCYYFSIT 187
           + FI  S+   +++   N   T  G W YFL  +   T
Sbjct: 626 FRFINISVFSIVLYFLTNLKRTAGGFWTYFLFLFIGAT 663


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 255 NCNTLLTF*GIWVYFLCYYFSITATPTVI 169
           N +T L F   W+Y LC   S   T T I
Sbjct: 60  NVSTRLIFWNKWIYILCANTSSNITATRI 88


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = -2

Query: 195 SITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVTANYSVIQPRAI 49
           +I ++PT   SS+ IS+ +    ++ + + + S+IP++++ S      I
Sbjct: 623 TILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVI 671


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 150 SNLASCFATTVLSTFNESSIPVTANY 73
           S+L +   T  LS F+E   P T NY
Sbjct: 686 SSLLTVLLTKCLSLFDEEFTPFTLNY 711


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 28  ENCMRYINGTRLDDRIIR 81
           E C+  +NGTR+ D+I++
Sbjct: 181 ERCVLSLNGTRVTDQILQ 198


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 7   YYAREDAENCMRYINGTRLDDRIIRCDW 90
           +++ E+A+  ++ +NG  +  R +R +W
Sbjct: 280 FHSPEEAKTVVQVLNGYEITGRRLRVEW 307


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 25  AENCMRYINGTRLDDRIIRCD 87
           A NC+R+I    LD+  I CD
Sbjct: 198 AWNCVRWIQENLLDENHIVCD 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,367,081
Number of Sequences: 5004
Number of extensions: 25496
Number of successful extensions: 75
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)