Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30p14
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0589 - 24117688-24119282,24119881-24119908,24120004-241200... 73 5e-14
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 30 0.45
03_06_0402 + 33681451-33681706,33682800-33682936,33683103-336831... 29 1.4
05_03_0402 + 13533055-13533501 28 1.8
02_05_1015 + 33512023-33512359,33513550-33514082 28 1.8
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340 27 3.2
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 27 4.2
05_01_0290 + 2270749-2271037,2272227-2272363,2272660-2272805,227... 27 5.6
02_05_1014 + 33510108-33510471,33510857-33511362 27 5.6
08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437 26 7.4
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 26 7.4
11_04_0027 - 12453488-12453547,12454972-12455673,12455907-124559... 26 9.8
04_04_0053 + 22389227-22389613,22390528-22390981,22391618-223916... 26 9.8
>02_04_0589 -
24117688-24119282,24119881-24119908,24120004-24120089,
24120196-24120220,24121188-24121326,24122344-24122567,
24122674-24122691
Length = 704
Score = 73.3 bits (172), Expect = 5e-14
Identities = 31/47 (65%), Positives = 41/47 (87%)
Frame = +1
Query: 7 YYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQV 147
YY+REDAE+ ++YI+GT LDDR IR D+D GF EGRQ+GRG++GGQ+
Sbjct: 82 YYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWGRGRSGGQM 128
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 30.3 bits (65), Expect = 0.45
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 16 REDAENCMRYINGTRLDDRIIRCDW 90
++DA+N + +NG L +R +RC+W
Sbjct: 295 QQDAQNAINELNGKWLGNRQVRCNW 319
>03_06_0402 +
33681451-33681706,33682800-33682936,33683103-33683153,
33683798-33683866,33684286-33684428,33685464-33685521,
33685823-33685938,33686298-33686391,33686950-33686961
Length = 311
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 4 EYYAREDAENCMRYINGTRLDDRIIRCDW 90
EY + E+A+ ++ +NGT+L R + DW
Sbjct: 177 EYESFEEAQTAIKAMNGTQLLTRTVYVDW 205
>05_03_0402 + 13533055-13533501
Length = 148
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 16 REDAENCMRYINGTRLDDRIIRCDW 90
RED E + +NG + DR +R DW
Sbjct: 118 REDGERAVDELNGYQAGDRRLRVDW 142
>02_05_1015 + 33512023-33512359,33513550-33514082
Length = 289
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 16 REDAENCMRYINGTRLDDRIIRCDW 90
REDAE + +NG D+ I+R +W
Sbjct: 259 REDAEKAISKLNGYGYDNLILRVEW 283
>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
Length = 603
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 274 KIYNPY*LQHIINVLGYLGLFSVLLFFHNRHAHRHSQFDIHL*PGLLFC 128
K N Y L + V+ F+ + FHN H ++++DI + +L C
Sbjct: 224 KQQNRYLLTGFLRVVSVYLPFAAIGLFHNSHRQAYNRYDIKVTYTILCC 272
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.1 bits (57), Expect = 4.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 16 REDAENCMRYINGTRLDDRIIRCDW 90
++DAEN ++ +NG + R + DW
Sbjct: 369 KQDAENAIKNVNGKVVAKRTVAVDW 393
>05_01_0290 +
2270749-2271037,2272227-2272363,2272660-2272805,
2272853-2272877
Length = 198
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 4 EYYAREDAENCMRYINGTRLDDRIIRCDW 90
EY E+A+ ++ ++GT L +II DW
Sbjct: 148 EYETFEEAQAAIKALDGTELLTQIISVDW 176
>02_05_1014 + 33510108-33510471,33510857-33511362
Length = 289
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 16 REDAENCMRYINGTRLDDRIIRCDWDA 96
REDAE + +NG D I+ +W A
Sbjct: 259 REDAERAIAKLNGYGYDSLILNVEWAA 285
>08_01_0788 + 7617929-7617969,7619848-7621622,7635250-7635437
Length = 667
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 241 INVLGYLGLFSVLLFFHNRHAHRHSQ 164
+N+LG+LG++ HAH H+Q
Sbjct: 587 VNLLGFLGVYGKSKDTLEAHAHAHTQ 612
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 346 YYKDLYYLN*TNMNPL*FHIKQPCKIYN 263
YY D++Y N MN L C +YN
Sbjct: 326 YYNDIFYFNAPMMNGLYIVNLDGCSVYN 353
>11_04_0027 -
12453488-12453547,12454972-12455673,12455907-12455940,
12456005-12456125,12456509-12457139
Length = 515
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 247 HIINVLGYLGLFSVLLFFHNRHAHRHSQFDIHL 149
HI+++ G L + V L F R HRH +F + L
Sbjct: 212 HIVHLGGNLRVPRVDLTFPERPVHRHEEFCLAL 244
>04_04_0053 +
22389227-22389613,22390528-22390981,22391618-22391673,
22391757-22391887,22391976-22392072,22393329-22393484
Length = 426
Score = 25.8 bits (54), Expect = 9.8
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = +1
Query: 4 EYYAREDAENCMRYINGTRLDDRIIRCDW 90
++ +R DAE ++ +NG+ + + +R W
Sbjct: 339 QFVSRTDAEEALQGLNGSVIGKQAVRLSW 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,398,602
Number of Sequences: 37544
Number of extensions: 154032
Number of successful extensions: 357
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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