Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30p14
(355 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.47
SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.82
SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_16227| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3
SB_50010| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098) 27 4.4
SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0) 27 5.8
SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28) 26 7.7
>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 30.3 bits (65), Expect = 0.47
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 280 PCKIYNPY*LQHIINVLGYL-GLFSVLLFFHNRHAHRHSQFDI 155
PC + PY + H+ ++GY+ + + LLF + H R + + I
Sbjct: 640 PCAMAVPYHVHHVFLLMGYINSMVNPLLFSYQNHQFRKAYWKI 682
>SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 29.5 bits (63), Expect = 0.82
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 114 STFNESSIPVTANYSVIQPR 55
ST+N+ + P++A Y VI+PR
Sbjct: 465 STYNDDTSPISATYKVIEPR 484
>SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = -2
Query: 213 FLCYYFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVTANYSVIQPRAIYIPHT 34
F C + + SS+ S ++ TT++ + SI T N++ I +++
Sbjct: 44 FACKLHGVLVMAFSVASSLSASAMSINRYTTIIYASKQKSITFTRNWTKIMLAFLWLFSA 103
Query: 33 IFGIFPRI 10
IF I P +
Sbjct: 104 IFAILPLV 111
>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 228 GIWVYFLCYYFSITATPTVIVSSIFISNLASCFATTVLSTFNE 100
GIW YF+ Y + P+V +S++ ++ AS F + NE
Sbjct: 719 GIWDYFIKSYHELLEKPSVSISTVALT-AASSFVYFAKLSMNE 760
>SB_16227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 334 LYYLN*TNMNPL*FHIKQPCKIYNPY*LQHIINVLG-YLGLFSVLLFF 194
L +N T + FHI+ C+ ++P +++V+G +L LF VLL +
Sbjct: 4 LSLINWTELGSPHFHIEVQCRKFDPV-YYTVVSVVGFFLPLFIVLLMY 50
>SB_50010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 334 LYYLN*TNMNPL*FHIKQPCKIYNPY*LQHIINVLG-YLGLFSVLLFF 194
L +N T + FHI+ C+ ++P +++V+G +L LF VLL +
Sbjct: 167 LSLINWTELGSPHFHIEVQCRKFDPV-YYTVVSVVGFFLPLFIVLLMY 213
>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
Length = 1450
Score = 27.1 bits (57), Expect = 4.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 174 RWAWRLWKNNSTENKPKYPRT 236
RWA++ W+ ++TE K + +T
Sbjct: 988 RWAFKAWRQSATEQKERLAQT 1008
>SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 604
Score = 26.6 bits (56), Expect = 5.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -2
Query: 222 WVYFLCYYFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVTANYSVIQPRAIYI 43
WV+ + + + + + + +S++A CFA T L + IP +IQP Y+
Sbjct: 331 WVFASYKHTPVVKSASKELCFLLLSSIALCFALTSLHVY----IPSDVICMIIQP-GKYL 385
Query: 42 PHT 34
HT
Sbjct: 386 SHT 388
>SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 26.6 bits (56), Expect = 5.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 33 LYEVYKWHEAG*PNNSL*LGCWI 101
LY YKWH+ +GCW+
Sbjct: 90 LYWEYKWHDKPDAEGFFNIGCWV 112
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 207 CYYFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVTA 79
C + T TV +S + F TTVL+T ++IP T+
Sbjct: 665 CQTLNPDGTCTVAPGYHIVSGMCQDFPTTVLTTAPTTTIPTTS 707
>SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)
Length = 503
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -1
Query: 250 QHIINVLGYLGLFSVL--LFFHNRHAHRHSQ 164
QH++ L + + S++ LF HNR+ +RH+Q
Sbjct: 471 QHLLMSLPLVVIVSLVYCLFVHNRYPNRHNQ 501
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,874,186
Number of Sequences: 59808
Number of extensions: 185112
Number of successful extensions: 447
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -